1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...agatcgtgatatagttgtttgcttgaatgaacatgtgcggtaccagaataccagataatcagaagaaatgaagttacaaaaatgctcctccttgttgtagGTAAATGCTCGCTGTGCAGTGAGACTGCGGAAGAGGATACAACATGAAGAGATGAAATCTGCCTACCAACGAAGG
species | Zea mays |
transcript | GRMZM2G144403_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCTTCCGCGGCTCCCTCCTCTACCTCCTCGCCTTCCTCTACCTCTACATG GTAAATGCTCGCTGTGCAGTGAGACTGCGGAAGAGGATACAACATGAAGAGEST: gi|211448929|gb|FL223015.1|FL223015
genomic: GCTTCCGCGGCTCCCTCCTCTACCTCCTCGCCTTCCTCTACCTCTACATGgtgggtactc ... cttgttgtagGTAAATGCTCGCTGTGCAGTGAGACTGCGGAAGAGGATACAACATGAAGAG
EST: GCTTCCGCGGCTCCCTCCTCTACCTCCTCGCCTTCCTCTACCTCTACATG GTAAATGCTCGCTGTGCAGTGAGACTGCGGAAGAGGATACAACATGAAGAGEST: gi|88757835|gb|DY541976.1|DY541976
genomic: GCTTCCGCGGCTCCCTCCTCTACCTCCTCGCCTTCCTCTACCTCTACATGgtgggtactc ... cttgttgtagGTAAATGCTCGCTGTGCAGTGAGACTGCGGAAGAGGATACAACATGAAGAG
EST: GCTTCCGCGGCTCCCTCCTCTACCTCCTCGCCTTCCTCTACCTCTACATG GTAAATGCTCGCTGTGCAGTGAGACTGCGGAAGAGGATACAACATGAAGAGEST: gi|211448931|gb|FL223017.1|FL223017
genomic: GCTTCCGCGGCTCCCTCCTCTACCTCCTCGCCTTCCTCTACCTCTACATGgtgggtactc ... cttgttgtagGTAAATGCTCGCTGTGCAGTGAGACTGCGGAAGAGGATACAACATGAAGAG
EST: CTTCCGCGGCTCCCTCCTCTACCTCGCGCGCCTTCCTCTACCTCTACATG GGAAATGCTCGCTGTGCAATGAGACTGCGGAAGAGGATACAACATGAAGAGEST: gi|211448932|gb|FL223018.1|FL223018
genomic: CTTCCGCGGCTCCCTCCTCTACCTC-CTCGCCTTCCTCTACCTCTACATGgtgggtactc ... cttgttgtagGTAAATGCTCGCTGTGCAGTGAGACTGCGGAAGAGGATACAACATGAAGAG
EST: GCTTCCGCGGCTCCCTCCTCTACCTCCTCGCCTTCCTCTACCTCTACATG GTAAATGCTCGCTGTGCAGTGAGACTGCGGAAGAGGATACAACATGAAGAG
genomic: GCTTCCGCGGCTCCCTCCTCTACCTCCTCGCCTTCCTCTACCTCTACATGgtgggtactc ... cttgttgtagGTAAATGCTCGCTGTGCAGTGAGACTGCGGAAGAGGATACAACATGAAGAG
gaataccagataatcagaagaaatgaagttacaaaaatgctcctccttgttgtagGTAAATGCTCGCTGTGCAGTGAGACTGCGGAAGAGGATACAACATGAAGAGATGAAATCTGCCTACCAACGAAGG
tgctcctccttgtt CT-rich tract
ttacaaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agatcgtgatatagttgtttgcttgaatgaacatgtgcggtaccagaataccagataatcagaagaaatgaagttacaaaaatgctcctccttgttgtagGTAAATGCTCGCTGTGCAGTGAGACTGCGGAAGAGGATACAACATGAAGAGATGAAATCTGCCTACCAACGAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - -tgtttgc
- - - - - - - - - - - ttgaatg
- - - - - - - - - - - - - - - - -tgtgcgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaaaaa