1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tccacaccgtattgtacacttaagtggattctgatactattgctgtacttctattatttttctgaattggcctctgtcctctcttgtttgttgaccatagGTTTGTGCGTCCAACTGCAATGAGTGAGCAAAGAACAACAGAATACATAGAAGGGAAATATGGAAAATTTGGGGTTGACCG
species | Zea mays |
transcript | GRMZM2G143525_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTCATGATGATTGATGCTCAAAACAGAGAATTTGTTGATTCATTTCATAG GTTTGTGCGTCCAACTGCAATGAGTGAGCAAAGAACAACAGAATACATAGAEST: gi|38687506|gb|CK144537.1|CK144537
genomic: GTCATGATGATTGATGCTCAAAACAGAGAATTTGTTGATTCATTTCATAGgtattacctc ... ttgaccatagGTTTGTGCGTCCAACTGCAATGAGTGAGCAAAGAACAACAGAATACATAGA
EST: GTCATGATGATTGATGCTCAAAACAGAGAATTTGTTGATTCATTTCATAG GTTTGTGCGTCCAACTGCAATGAGTGAGCAAAGAACAACAGAATACAEST: gi|93015209|gb|EB640729.1|EB640729
genomic: GTCATGATGATTGATGCTCAAAACAGAGAATTTGTTGATTCATTTCATAGgtattacctc ... ttgaccatagGTTTGTGCGTCCAACTGCAATGAGTGAGCAAAGAACAACAGAATACA
EST: GTCATGATGATTGATGCTCAAAACAGAGAATTTGTTGATTCATTTCATAG GTTTGTGCGTCCAACTGCAATGAGTGAGCAAAGAACAACAGAATACATAGAEST: gi|71437404|gb|DR818454.1|DR818454
genomic: GTCATGATGATTGATGCTCAAAACAGAGAATTTGTTGATTCATTTCATAGgtattacctc ... ttgaccatagGTTTGTGCGTCCAACTGCAATGAGTGAGCAAAGAACAACAGAATACATAGA
EST: GTCATGATGATTGATGCTCAAAACAGAGAATTTGTTGATTCATTTCATAG GTTTGTGCGTCCAACTGCAATGAGTGAGCAAAGAACAACAGAATACATAGAEST: gi|89758511|gb|DY687667.1|DY687667
genomic: GTCATGATGATTGATGCTCAAAACAGAGAATTTGTTGATTCATTTCATAGgtattacctc ... ttgaccatagGTTTGTGCGTCCAACTGCAATGAGTGAGCAAAGAACAACAGAATACATAGA
EST: GTCATGATGATTGATGCTCAAAACAGAGAATTTGTTGATTCATTTCATAG GTTTGTGCGTCCAACTGCAATGAGTGAGCAAAGAACAACAGAATACATAGAEST: gi|71434586|gb|DR815636.1|DR815636
genomic: GTCATGATGATTGATGCTCAAAACAGAGAATTTGTTGATTCATTTCATAGgtattacctc ... ttgaccatagGTTTGTGCGTCCAACTGCAATGAGTGAGCAAAGAACAACAGAATACATAGA
EST: GTCATGATGATTGATGCTCAAAACAGAGAATTTGTTGATTCATTTCATAG GTTTGTGCGTCCAACTGCAATGAGTGAGCAAAGAACAACAGAATACATAGAEST: gi|213188322|gb|FM193827.1|FM193827
genomic: GTCATGATGATTGATGCTCAAAACAGAGAATTTGTTGATTCATTTCATAGgtattacctc ... ttgaccatagGTTTGTGCGTCCAACTGCAATGAGTGAGCAAAGAACAACAGAATACATAGA
EST: GTCATGATGATTGATGCTCAAAACAGAGAATTTGTTGATTCATTTCATAG GTTTGTGCGTCCAACTGCAATGAGTGAGCAAAGAACAACAGAATACATAGAEST: gi|50323087|gb|CO518213.1|CO518213
genomic: GTCATGATGATTGATGCTCAAAACAGAGAATTTGTTGATTCATTTCATAGgtattacctc ... ttgaccatagGTTTGTGCGTCCAACTGCAATGAGTGAGCAAAGAACAACAGAATACATAGA
EST: GTCATGATGATTGATGCTCAAAACAGAGAATTTGTTGATTCATTTCATAG GTTTGTGCGTCCAACTGCAATGAGTGAGCAAAGAACAACAGAATACATAGA
genomic: GTCATGATGATTGATGCTCAAAACAGAGAATTTGTTGATTCATTTCATAGgtattacctc ... ttgaccatagGTTTGTGCGTCCAACTGCAATGAGTGAGCAAAGAACAACAGAATACATAGA
tacttctattatttttctgaattggcctctgtcctctcttgtttgttgaccatagGTTTGTGCGTCCAACTGCAATGAGTGAGCAAAGAACAACAGAATACATAGAAGGGAAATATGGAAAATTTGGGGTTGACCG
tgttgac putative branch site (score: 3)
cctctgtcctctcttg CT-rich tract
tattatttttctgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccacaccgtattgtacacttaagtggattctgatactattgctgtacttctattatttttctgaattggcctctgtcctctcttgtttgttgaccatagGTTTGTGCGTCCAACTGCAATGAGTGAGCAAAGAACAACAGAATACATAGAAGGGAAATATGGAAAATTTGGGGTTGACCG
-ccacacc
- - - - - - - - - - - - - gattctg
- - - - - - - - - - - - - - - - - - - attgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttttctg