1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tctgtcttttcctgtgctgttaaaaaagttaaattgtttttccataacaatggagagttgtttcacatcactcatgggatgctctttgatttgtgtgcagACTGGACAACTTCTGAAAGAGTCTGACAAGGAATCCGGACATCAGAAGACCATTTCATCATTGTCAAAATCCCTAGATTGGTCACATTTTATTACTGGCT
species | Zea mays |
transcript | GRMZM2G143330_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCATCATCACTGCCGGAGAGGATGCCACCGTTCGCATTTGGGATTCAGAG ACTGGACAACTTCTGAAAGAGTCTGACAAGGAATCCGGACATCAGAAGACCEST: gi|101401501|gb|EB822430.1|EB822430
genomic: CCATCATCACTGCCGGAGAGGATGCCACCGTTCGCATTTGGGATTCAGAGgttaggatgc ... ttgtgtgcagACTGGACAACTTCTGAAAGAGTCTGACAAGGAATCCGGACATCAGAAGACC
EST: CCATCATCACTGCCGGAGAGGATGCCACCGTTCGCATTTGGGATTCAGAG ACTGGACAACTTCTGAAGGAGTCTGACAAGGAATCCGGACATCAGAAGACCEST: gi|78119408|gb|DV537792.1|DV537792
genomic: CCATCATCACTGCCGGAGAGGATGCCACCGTTCGCATTTGGGATTCAGAGgttaggatgc ... ttgtgtgcagACTGGACAACTTCTGAAAGAGTCTGACAAGGAATCCGGACATCAGAAGACC
EST: CTATCATCACTGCCGGAGAGGATGCCACCGTTCGCATTTGGGATTCAGAG ACTGGACAACTTCTGAAAGAGTCTGACAAGGAATCCGGACATCAGAAGACCEST: gi|101401499|gb|EB822429.1|EB822429
genomic: CCATCATCACTGCCGGAGAGGATGCCACCGTTCGCATTTGGGATTCAGAGgttaggatgc ... ttgtgtgcagACTGGACAACTTCTGAAAGAGTCTGACAAGGAATCCGGACATCAGAAGACC
EST: CTGCCGGAGAGGATGCCACCGTTCGCATTTGGGATTCAGAG ACTGGACAACTTCTGAAGGAGTCTGACAAGGAATCCGGACATCAGAAGACCEST: gi|211094201|gb|FL010324.1|FL010324
genomic: CTGCCGGAGAGGATGCCACCGTTCGCATTTGGGATTCAGAGgttaggatgc ... ttgtgtgcagACTGGACAACTTCTGAAAGAGTCTGACAAGGAATCCGGACATCAGAAGACC
EST: CCATCATCACTGCCGGAGAGGATGCCACCGTTCGCATTTGGGATTCAGAG ACTGGACAACTTCTGAAAGAGTCTGACAAGGAATCCGGACATCAGAAGACCEST: gi|71440740|gb|DR821790.1|DR821790
genomic: CCATCATCACTGCCGGAGAGGATGCCACCGTTCGCATTTGGGATTCAGAGgttaggatgc ... ttgtgtgcagACTGGACAACTTCTGAAAGAGTCTGACAAGGAATCCGGACATCAGAAGACC
EST: CCATCATCACTGCCGGAGAGGATGCCACCGTTCGCATTTGGGATTCAGAG ACTGGACAACTTTCTGAAAGAGEST: gi|88751072|gb|DY535213.1|DY535213
genomic: C-ATCATCACTGCCGGAGAGGATGCCACCGTTCGCATTTGGGATTCAGAGgttaggatgc ... ttgtgtgcagACTGGACAACTT-CTGAAAGAG
EST: CCATCATCACTGCCGGAGAGGATGCCACCGTTCGCATTTGGGATTCAGAG ACTGGACAACTTCTGAAAGAGTCTGACAAGGAATCCGGACATCAGAAGACCEST: gi|31909181|gb|CD650790.1|CD650790
genomic: CCATCATCACTGCCGGAGAGGATGCCACCGTTCGCATTTGGGATTCAGAGgttaggatgc ... ttgtgtgcagACTGGACAACTTCTGAAAGAGTCTGACAAGGAATCCGGACATCAGAAGACC
EST: CCATCATCACTGCCGGAGAAGATGCCACCGTTCGCATTTGGGATTCAGAG ACTGGACAACTTCTGAAAGAGTCTGACAAGGAATCCCGACATCAGAAGACCEST: gi|93283869|gb|EB676133.1|EB676133
genomic: CCATCATCACTGCCGGAGAGGATGCCACCGTTCGCATTTGGGATTCAGAGgttaggatgc ... ttgtgtgcagACTGGACAACTTCTGAAAGAGTCTGACAAGGAATCCGGACATCAGAAGACC
EST: CCATCATCACTGCCGGAGAGGATGC-ACCGTTCGCATTTGGGATTCAGAG ACTGGACAACTTCTGAAAGAGTCTGACEST: gi|91872573|gb|EB402530.1|EB402530
genomic: CCATCATCACTGCCGGAGAGGATGCCACCGTTCGCATTTGGGATTCAGAGgttaggatgc ... ttgtgtgcagACTGGACAACTTCTGAAAGAGTCTGAC
EST: CCATCATCACTGCCGGAGAGGATGCCACCGTTCGCATTTGGGATTCAGAG ACTGGACAACTTCTGAAAGAGTCTGACAAGGAATCCGGACATCAGAAGACCEST: gi|78119407|gb|DV537791.1|DV537791
genomic: CCATCATCACTGCCGGAGAGGATGCCACCGTTCGCATTTGGGATTCAGAGgttaggatgc ... ttgtgtgcagACTGGACAACTTCTGAAAGAGTCTGACAAGGAATCCGGACATCAGAAGACC
EST: CTATCATCACTGCCGGAGAGGATGCCACCGTTCGCATTTGGGATTCAGAG ACTGGACAACTTCTGAAAGAGTCTGACAAGGAATCCGGACATCAGAAGACCEST: gi|148995509|gb|EE034699.2|EE034699
genomic: CCATCATCACTGCCGGAGAGGATGCCACCGTTCGCATTTGGGATTCAGAGgttaggatgc ... ttgtgtgcagACTGGACAACTTCTGAAAGAGTCTGACAAGGAATCCGGACATCAGAAGACC
EST: CCATCATCACTGCCGGAGAGGATGCCACCGTTCGCATTTGGGATTCAGAG ACTGGACAACTTCTGAAAGAGTCTGACAAGGAATCCGGACATCAGAAGACCEST: gi|148930479|gb|EE285032.2|EE285032
genomic: CCATCATCACTGCCGGAGAGGATGCCACCGTTCGCATTTGGGATTCAGAGgttaggatgc ... ttgtgtgcagACTGGACAACTTCTGAAAGAGTCTGACAAGGAATCCGGACATCAGAAGACC
EST: CCATCATCACTGCCGGAGAGGATGCCACCGTTCGCATTTGGGATTCAGAG ACTGGACAACTTCTGAAAGAGTCTGACAAGGAATCCGGACATCAGAAGACCEST: gi|78087877|gb|DV516270.1|DV516270
genomic: CCATCATCACTGCCGGAGAGGATGCCACCGTTCGCATTTGGGATTCAGAGgttaggatgc ... ttgtgtgcagACTGGACAACTTCTGAAAGAGTCTGACAAGGAATCCGGACATCAGAAGACC
EST: CCATCATCACTGCCGGAGAGGATGCCACCGTTCGCATTTGGGATTCAGAG ACTGGACAACTTCTGAAAGAGTCTGACAAGGAATCCGGACATCAGAAGACCEST: gi|71301123|gb|DR786594.1|DR786594
genomic: CCATCATCACTGCCGGAGAGGATGCCACCGTTCGCATTTGGGATTCAGAGgttaggatgc ... ttgtgtgcagACTGGACAACTTCTGAAAGAGTCTGACAAGGAATCCGGACATCAGAAGACC
EST: CCATCATCACTGCCGGAGAGGATGCCACCGTTCGCATTTGGGATTCAGAG ACTGGACAACTTCTGAAAGAGTCTGACAAGGAATCCGGACATCAGAAGACCEST: gi|71301121|gb|DR786593.1|DR786593
genomic: CCATCATCACTGCCGGAGAGGATGCCACCGTTCGCATTTGGGATTCAGAGgttaggatgc ... ttgtgtgcagACTGGACAACTTCTGAAAGAGTCTGACAAGGAATCCGGACATCAGAAGACC
EST: GGGATTCAGAG ACTGGACAATTTCTGAAAGAGTCTGACAAGGAATCCGGACATCAGAAGACC
genomic: GGGATTCAGAGgttaggatgc ... ttgtgtgcagACTGGACAACTTCTGAAAGAGTCTGACAAGGAATCCGGACATCAGAAGACC
aacaatggagagttgtttcacatcactcatgggatgctctttgatttgtgtgcagACTGGACAACTTCTGAAAGAGTCTGACAAGGAATCCGGACATCAGAAGACCATTTCATCATTGTCAAAATCCCTAGATTGGTCACATTTTATTACTGGCT
tttgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctgtcttttcctgtgctgttaaaaaagttaaattgtttttccataacaatggagagttgtttcacatcactcatgggatgctctttgatttgtgtgcagACTGGACAACTTCTGAAAGAGTCTGACAAGGAATCCGGACATCAGAAGACCATTTCATCATTGTCAAAATCCCTAGATTGGTCACATTTTATTACTGGCT
- - - - - - - tgctgtt
- - - - - - - - - - -aaaaaag
- - - - - - - - - - - - - - - - - tgttttt
- - - - - - - - - - - - - - - - - - - - - cataacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttca