1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtccgctttggttttatgcaacagcgggtaggtgtcgttttaggatgggattcgtttgctcgatggaaatgatggtgcgtatgtatgcaatcaagtaaaagtcagacgcaattttgatgctgcgatgccctgtagtgttggtacgctgacaagctttatactctcctaagtgcagGTTACATGATGTTGTCCACAGCGAGAAGCGGATATACCTCGTCTTCGAGTACCTGGATCTGGACCTCAAGAAGTTCATGGACTCTTGCCCGGAGTTTGCT
species | Zea mays |
transcript | GRMZM2G143213_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATCCGCGAGATCTCTCTCCTCAAGGAGATGAACCACGGCAACATCGTCAG GTTACATGATGTTGTCCACAGCGAGAAGCGGATATACCTCGTCTTCGAGTAEST: gi|21390004|gb|BQ528053.1|BQ528053
genomic: ATCCGCGAGATCTCTCTCCTCAAGGAGATGAACCACGGCAACATCGTCAGgtccgctttg ... ctaagtgcagGTTACATGATGTTGTCCACAGCGAGAAGCGGATATACCTCGTCTTCGAGTA
EST: ATCCGCGAGATCTCTCTCCTCAAGGAGATGAACCACGGCAACATCGTCAG GTTACATGATGTTGTCCACAGCGAGAAGCGGATATACCTCGTCTTCGAGTAEST: gi|60397283|gb|DN230099.1|DN230099
genomic: ATCCGCGAGATCTCTCTCCTCAAGGAGATGAACCACGGCAACATCGTCAGgtccgctttg ... ctaagtgcagGTTACATGATGTTGTCCACAGCGAGAAGCGGATATACCTCGTCTTCGAGTA
EST: ATCCGCGAGATCTCTCTCCTCAAGGAGATGAACCACGGCAACATCGTCAG GTTACATGATGTTGTCCACAGCGAGAAGCGGATATACCTCGTCTTCGAGTAEST: gi|6020558|gb|AW065591.1|AW065591
genomic: ATCCGCGAGATCTCTCTCCTCAAGGAGATGAACCACGGCAACATCGTCAGgtccgctttg ... ctaagtgcagGTTACATGATGTTGTCCACAGCGAGAAGCGGATATACCTCGTCTTCGAGTA
EST: CTCTCTCCTCAAGGAGATGAACCACGGCAACATCGTCAG GTTACATGATGTTGTCCACAGCGAGAAGCGGATATACCTCGTCTTCGAGTAEST: gi|22542162|gb|BU092600.1|BU092600
genomic: CTCTCTCCTCAAGGAGATGAACCACGGCAACATCGTCAGgtccgctttg ... ctaagtgcagGTTACATGATGTTGTCCACAGCGAGAAGCGGATATACCTCGTCTTCGAGTA
EST: ATCCGCGAGATCTCTCTCCTCAAGGAGATGAACCACGGCAACATCGTCAG GTTACATGATGTTGTCCACAGCGAGAAGCGGATATACCTCGTCTTCGAGTAEST: gi|60398446|gb|DN231262.1|DN231262
genomic: ATCCGCGAGATCTCTCTCCTCAAGGAGATGAACCACGGCAACATCGTCAGgtccgctttg ... ctaagtgcagGTTACATGATGTTGTCCACAGCGAGAAGCGGATATACCTCGTCTTCGAGTA
EST: ATCCGCGAGATCTCTCTCCTCAAGGAGATGAACCACGGCAACATCGTCAG GTTACATGATGTTGTCCACAGCGAGAAGCGGATATACCTCGTCTTCGAGTA
genomic: ATCCGCGAGATCTCTCTCCTCAAGGAGATGAACCACGGCAACATCGTCAGgtccgctttg ... ctaagtgcagGTTACATGATGTTGTCCACAGCGAGAAGCGGATATACCTCGTCTTCGAGTA
tgcgatgccctgtagtgttggtacgctgacaagctttatactctcctaagtgcagGTTACATGATGTTGTCCACAGCGAGAAGCGGATATACCTCGTCTTCGAGTACCTGGATCTGGACCTCAAGAAGTTCATGGACTCTTGCCCGGAGTTTGCT
cgctgac putative branch site (score: 3)
ctttatactctcct putative PPT
tttatact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtccgctttggttttatgcaacagcgggtaggtgtcgttttaggatgggattcgtttgctcgatggaaatgatggtgcgtatgtatgcaatcaagtaaaagtcagacgcaattttgatgctgcgatgccctgtagtgttggtacgctgacaagctttatactctcctaagtgcagGTTACATGATGTTGTCCACAGCGAGAAGCGGATATACCTCGTCTTCGAGTACCTGGATCTGGACCTCAAGAAGTTCATGGACTCTTGCCCGGAGTTTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA