1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...atatgcttgtcttgttcttgaggttgttcctaaagtgtccactctctacatttgagatcctgatgtgctatactttttgttggttgtctacatattgcagCTTGCATTCCCTGATGCTGTTTACCTAGTTGATGCTATTGAGGGTGGAAAAGAACTTATTCAAGCTT
species | Zea mays |
transcript | GRMZM2G142984_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACTGTGAAGGTGTTGATCTCTGCCGCAATGGTGCTCTCTGTATTATGCAG CTTGCATTCCCTGATGCTGTTTACCTAGTTGATGCTATTGAGGGTGGAAAAEST: gi|60358611|gb|DN225584.1|DN225584
genomic: ACTGTGAAGGTGTTGATCTCTGCCGCAATGGTGCTCTCTGTATTATGCAGgtgagcaaaa ... catattgcagCTTGCATTCCCTGATGCTGTTTACCTAGTTGATGCTATTGAGGGTGGAAAA
EST: ACTGTGAAGGTGTTGATCTCTGCCGCAATGGTGCTCTCTGTATTATGCAG CTTGCATTCCCTGATGCTGTTTACCTAGTTGATGCTATTGAGGGTGGAAAAEST: gi|211321691|gb|FL409781.1|FL409781
genomic: ACTGTGAAGGTGTTGATCTCTGCCGCAATGGTGCTCTCTGTATTATGCAGgtgagcaaaa ... catattgcagCTTGCATTCCCTGATGCTGTTTACCTAGTTGATGCTATTGAGGGTGGAAAA
EST: ACTGTGAAGGTGTTGATCTCTGCCGCAATGGTGCTCTCTGTATTATGCAG CTTGCATTCCCTGATGCTGTTTACCTAGTTGATGCTATTGAGGGTGGAAAAEST: gi|211288495|gb|FL414818.1|FL414818
genomic: ACTGTGAAGGTGTTGATCTCTGCCGCAATGGTGCTCTCTGTATTATGCAGgtgagcaaaa ... catattgcagCTTGCATTCCCTGATGCTGTTTACCTAGTTGATGCTATTGAGGGTGGAAAA
EST: ACTGTGAAGGTGTTGATCTCTGCCGCAATGGTGCTCTCTGTATTATGCAG CTTGCATTCCCTGATGCTEST: gi|211452427|gb|FK953962.1|FK953962
genomic: ACTGTGAAGGTGTTGATCTCTGCCGCAATGGTGCTCTCTGTATTATGCAGgtgagcaaaa ... catattgcagCTTGCATTCCCTGATGCT
EST: ACTGTGAAGGTGTTGATCTCTGCCGCAATGGTGCTCTCTGTATTATGCAG CTTGCATTCCCTGATGCTGTTTTACCTAGTTGATGCTATTGAGGGTGGAAAEST: gi|211062502|gb|FL371367.1|FL371367
genomic: ACTGTGAAGGTGTTGATCTCTGCCGCAATGGTGCTCTCTGTATTATGCAGgtgagcaaaa ... catattgcagCTTGCATTCCCTGATGCTGTTT-ACCTAGTTGATGCTATTGAGGGTGGAAA
EST: ACTGTGAAGGTGTTGATCTCTGCCGCAATGGTGCTCTCTGTATTATGCAG CTTGCATTCCCTGATGCTGTTTACCTAGTTGATGCTATTGAGGGTGGAAAA
genomic: ACTGTGAAGGTGTTGATCTCTGCCGCAATGGTGCTCTCTGTATTATGCAGgtgagcaaaa ... catattgcagCTTGCATTCCCTGATGCTGTTTACCTAGTTGATGCTATTGAGGGTGGAAAA
ctacatttgagatcctgatgtgctatactttttgttggttgtctacatattgcagCTTGCATTCCCTGATGCTGTTTACCTAGTTGATGCTATTGAGGGTGGAAAAGAACTTATTCAAGCTT
tcctgat putative branch site (score: 3)
tatacttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatgcttgtcttgttcttgaggttgttcctaaagtgtccactctctacatttgagatcctgatgtgctatactttttgttggttgtctacatattgcagCTTGCATTCCCTGATGCTGTTTACCTAGTTGATGCTATTGAGGGTGGAAAAGAACTTATTCAAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT