1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ctctatctggatctcaacgcgttgttctaggcatcgtatgcactacctgctcgaaaccttaacgaatgaccgccggtcgcttccttttccaaattatcagAATGCTTAAAGGACGCAGCTTTCCTGGGAAGGTTTTGCTAACCCGGCGATCCGAGCCTCTCTCCCCTCCTGATTATTCTCCAAGCTTTGAGAGCGAGCAC
species | Zea mays |
transcript | GRMZM2G142806_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCCAATAACACGGAGTGGCGCTTCAACCAGACCCTCCGCAACGTGCAAGG AATGCTTAAAGGACGCAGCTTTCCTGGGAAGGTTTTGCTAACCCGGCGATC
genomic: CCCAATAACACGGAGTGGCGCTTCAACCAGACCCTCCGCAACGTGCAAGGgtaagcaggc ... aaattatcagAATGCTTAAAGGACGCAGCTTTCCTGGGAAGGTTTTGCTAACCCGGCGATC
cctgctcgaaaccttaacgaatgaccgccggtcgcttccttttccaaattatcagAATGCTTAAAGGACGCAGCTTTCCTGGGAAGGTTTTGCTAACCCGGCGATCCGAGCCTCTCTCCCCTCCTGATTATTCTCCAAGCTTTGAGAGCGAGCAC
ccttaac putative branch site (score: 169)
tcgcttccttttcca putative PPT
aaattatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctctatctggatctcaacgcgttgttctaggcatcgtatgcactacctgctcgaaaccttaacgaatgaccgccggtcgcttccttttccaaattatcagAATGCTTAAAGGACGCAGCTTTCCTGGGAAGGTTTTGCTAACCCGGCGATCCGAGCCTCTCTCCCCTCCTGATTATTCTCCAAGCTTTGAGAGCGAGCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - ctggatc
- - - - - - - - - - - - - - - - - -gtatgca
- - - - - - - - - - - - - - - - - - - - - - -cctgctc