1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atcttgtgacctggcgactcagtgagacaactcccaccagtgcactaggcgtgtcctttgctgcaattttcatgagttccaaattccaatatcatcacagGTATATTCAAGCAGAACGGTGGCACCTAGGGATGGATTCGTCTTATGATATTCCATTTTCAGGGAGGATATGGAGGCGTCTTTCGAAAAATATCAATAGG
species | Zea mays |
transcript | GRMZM2G142553_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GACTCTCTTGGTCTTCACTCCAGTCAAAAGCTTTTTGACATAGTTGCGAG GTATATTCAAGCAGAACGGTGGCACCTAGGGATGGATTCGTCTTATGATATEST: gi|32945884|gb|CF050703.1|CF050703
genomic: GACTCTCTTGGTCTTCACTCCAGTCAAAAGCTTTTTGACATAGTTGCGAGgtatgttatc ... atcatcacagGTATATTCAAGCAGAACGGTGGCACCTAGGGATGGATTCGTCTTATGATAT
EST: GACTCTCTTGGTCTTCACTCCAGTCAAAAGCTTTTTGACATAGTTGCGAG GTATATTCAAGCAGAACGGTGGCACCTAGGGATGGATTCGTCTTATGATATEST: gi|193502411|gb|AM939258.1|AM939258
genomic: GACTCTCTTGGTCTTCACTCCAGTCAAAAGCTTTTTGACATAGTTGCGAGgtatgttatc ... atcatcacagGTATATTCAAGCAGAACGGTGGCACCTAGGGATGGATTCGTCTTATGATAT
EST: GACTCTCTTGGTCTTCACTCCAGTCAAAAGCTTTTTGACATAGTTGCGAG GTATATTCAAGCAGAACGGTGGCACCTAGGGATGGATTCGTCTTATGATATEST: gi|93014963|gb|EB640483.1|EB640483
genomic: GACTCTCTTGGTCTTCACTCCAGTCAAAAGCTTTTTGACATAGTTGCGAGgtatgttatc ... atcatcacagGTATATTCAAGCAGAACGGTGGCACCTAGGGATGGATTCGTCTTATGATAT
EST: GACTCTCTTGGTCTTCACTCCAGTCAAAAGCTTTTTGACATAGTTGCGAG GTATATTCAAGCAGAACGGTGGCACCTAGGGATGGATTCGTCTTATGATATEST: gi|71305064|gb|DR788669.1|DR788669
genomic: GACTCTCTTGGTCTTCACTCCAGTCAAAAGCTTTTTGACATAGTTGCGAGgtatgttatc ... atcatcacagGTATATTCAAGCAGAACGGTGGCACCTAGGGATGGATTCGTCTTATGATAT
EST: GACTCTCTTGGTCTTCACTCCAGTCAAAAGCTTTTTGACATAGTTGCGAG GTATATTCAAGCAGAACGGTGGCACCTAGGGATGGATTCGTCTTATGATATEST: gi|193502468|gb|AM939287.1|AM939287
genomic: GACTCTCTTGGTCTTCACTCCAGTCAAAAGCTTTTTGACATAGTTGCGAGgtatgttatc ... atcatcacagGTATATTCAAGCAGAACGGTGGCACCTAGGGATGGATTCGTCTTATGATAT
EST: GACTCTCTTGGTCTTCACTCCAGTCAAAAGCTTTTTGACATAGTTGCGAG GTATATTCAAGCAGAACGGTGGCACCTAGGGATGGATTCGTCTTATGATATEST: gi|86471376|gb|DY237746.1|DY237746
genomic: GACTCTCTTGGTCTTCACTCCAGTCAAAAGCTTTTTGACATAGTTGCGAGgtatgttatc ... atcatcacagGTATATTCAAGCAGAACGGTGGCACCTAGGGATGGATTCGTCTTATGATAT
EST: GACTCTCTTGGTCTTCACTCCAGTCAAAAGCTTTTTGACATAGTTGCGAG GTATATTCAAGCAGAACGGTGGCACCTAGGGATGGATTCGTCTTATGATATEST: gi|148992843|gb|EE033670.2|EE033670
genomic: GACTCTCTTGGTCTTCACTCCAGTCAAAAGCTTTTTGACATAGTTGCGAGgtatgttatc ... atcatcacagGTATATTCAAGCAGAACGGTGGCACCTAGGGATGGATTCGTCTTATGATAT
EST: GACTCTCTTGGTCTTCACTCCAGTCAAAAGCTTTTTGACATAGTTGCGAG GTATATTCAAGCAGAACGGTGGCACCTAGGGATGGATTCGTCTTATGATATEST: gi|149000422|gb|EE037593.2|EE037593
genomic: GACTCTCTTGGTCTTCACTCCAGTCAAAAGCTTTTTGACATAGTTGCGAGgtatgttatc ... atcatcacagGTATATTCAAGCAGAACGGTGGCACCTAGGGATGGATTCGTCTTATGATAT
EST: GACTCTCTTGGTCTTCACTCCAGTCAAAAGCTTTTTGACATAGTTGCGAG GTATATTCAAGCAGAACGGTGGCACCTAGGGAGGGATTCGTCTTATGATATEST: gi|71767171|gb|DR965108.1|DR965108
genomic: GACTCTCTTGGTCTTCACTCCAGTCAAAAGCTTTTTGACATAGTTGCGAGgtatgttatc ... atcatcacagGTATATTCAAGCAGAACGGTGGCACCTAGGGATGGATTCGTCTTATGATAT
EST: GACTCTCTTGGTCTTCACTCCAGTCAAAAGCTTTTTGACATAGTTGCGAG GTATATTCAAGCAGAACGGTGGCACCTAGGGATGGATTCGTCTTATGATAT
genomic: GACTCTCTTGGTCTTCACTCCAGTCAAAAGCTTTTTGACATAGTTGCGAGgtatgttatc ... atcatcacagGTATATTCAAGCAGAACGGTGGCACCTAGGGATGGATTCGTCTTATGATAT
taggcgtgtcctttgctgcaattttcatgagttccaaattccaatatcatcacagGTATATTCAAGCAGAACGGTGGCACCTAGGGATGGATTCGTCTTATGATATTCCATTTTCAGGGAGGATATGGAGGCGTCTTTCGAAAAATATCAATAGG
aattttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcttgtgacctggcgactcagtgagacaactcccaccagtgcactaggcgtgtcctttgctgcaattttcatgagttccaaattccaatatcatcacagGTATATTCAAGCAGAACGGTGGCACCTAGGGATGGATTCGTCTTATGATATTCCATTTTCAGGGAGGATATGGAGGCGTCTTTCGAAAAATATCAATAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - tgacctg
- - - - - - - - - - - - agacaac
- - - - - - - - - - - - - - - - -ccaccag
- - - - - - - - - - - - - - - - - - - - tgcacta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttcatg