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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagaccgagaaatgtatgtcttttcagaaatctggtattcgtttcagttgtgatgatataggcaggcagctccagtaggtgttgttggataggcagaagaaattccccttctcagcaatctaaacctgtatgcttcttttcccttttgatctccagATCTTCCAGGGTGGCCGTTGTTCTCGCCTCCTAAGGTGCAGTTGGACAAGTGTACCAAGTGCTCCAGAGAATTCTGTTCTGCAATCAACTTCCGGAGGCA

Basic information

species Zea mays
transcript GRMZM2G142502_T03
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G142502_T03 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os09g39660.3 (Oryza sativa), 3'ss of exon 1
--------------------------gtgagaccgagaaatgtatgtcttttcagaa-atctggtattcgtttcagttgtgatgatataggcaggcagctccagtaggtgttgt-tggatag---gcagaagaaattcccct--tctcagcaatctaaacctgtatgcttcttttcccttttgatctccagATCTTCCAGGGTGGCCGTTGTTCTCGCCTCCTAAGGTGCAGTTGGACAAGTGTACCAAGTGCTCCAGAGAATTCTGTTCTGCAATCAACTTCCGGAGGCA
                           |    ||        |   ||  | |  || | |   |     |||   |||   |  | | |        ||     || |   || |  || |    |||  | |||| |       ||||||||    | |  || |      | |||| | |     |||||||||| || ||||| ||||| |||||||||||| | |||||| | ||||||||||||||  ||||                                 
gtatattcattcattcctctcccgaaatccccccctcctccctccctccctcctcaacaacacatccggatttggattggtttcttctcgatttcttcctttgacagattgcgtgtatattgctaacagtggcaatttcttcgggttcagCAATGCCCAACGTTAGGTCC---TCCCCTGTCG-----CAGATCTTCCTGGATGGCCATTGTTTTCGCCTCCTAAGCTTCAGTTGCAAAAGTGTACCAAGTGTCCCAG---------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149014312|gb|EE043889.2|EE043889
EST:     AATCCCGGACGCTGTTGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAATGGTGAGACCGAG               
genomic: AATCCCGGACGCTGTTGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAA---T--------Ggtgagaccga ...
EST: gi|149014312|gb|EE043889.2|EE043889
EST:     AATCCCGGACGCTGTTGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAATGGTGAGACCGAG               
genomic: AATCCCGGACGCTGTTGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAA---T--------Ggtgagaccga ...
EST: gi|149014312|gb|EE043889.2|EE043889
EST:     AATCCCGGACGCTGTTGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAATGGTGAGACCGAG               
genomic: AATCCCGGACGCTGTTGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAA---T--------Ggtgagaccga ...
EST: gi|149014312|gb|EE043889.2|EE043889
EST:     AATCCCGGACGCTGTTGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAATGGTGAGACCGAG               
genomic: AATCCCGGACGCTGTTGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAA---T--------Ggtgagaccga ...
EST: gi|149014312|gb|EE043889.2|EE043889
EST:     AATCCCGGACGCTGTTGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAATGGTGAGACCGAG               
genomic: AATCCCGGACGCTGTTGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAA---T--------Ggtgagaccga ...
EST: gi|78082996|gb|DV511389.1|DV511389
EST:     AATCCCGGACGCTGTTGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAATG                         ATCTTCCAGGGTGGCCGTTGTTCTCGCCTCCTAAGGTGCAGTTGGACAAGT
genomic: AATCCCGGACGCTGTTGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAATGgtgagaccga ... tgatctccagATCTTCCAGGGTGGCCGTTGTTCTCGCCTCCTAAGGTGCAGTTGGACAAGT
EST: gi|78081830|gb|DV510242.1|DV510242
EST:     AATCCCGGACGCTGTTGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAATG                         ATCTTCCAGGGTGGCCGTTGTTCTCGCCTCCTAAGGTGCAGTTGGACAAGT
genomic: AATCCCGGACGCTGTTGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAATGgtgagaccga ... tgatctccagATCTTCCAGGGTGGCCGTTGTTCTCGCCTCCTAAGGTGCAGTTGGACAAGT
EST: gi|211422460|gb|FK998906.1|FK998906
EST:     AATCCCGGACGCTGTTGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAATG                         ATCTTCCAGGGTGGCCGTTGTTCTCGCCTCCTAAGGTGCAGCTGGACAAGT
genomic: AATCCCGGACGCTGTTGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAATGgtgagaccga ... tgatctccagATCTTCCAGGGTGGCCGTTGTTCTCGCCTCCTAAGGTGCAGTTGGACAAGT
EST: gi|149079392|gb|EE168367.2|EE168367
EST:     AATCCCGGACGCTGTTGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAATG                         G
genomic: AATCCCGGACGCTGTTGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAATGgtgagaccga ... tgatctccag-
EST: gi|149079392|gb|EE168367.2|EE168367
EST:     AATCCCGGACGCTGTTGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAATG                         G
genomic: AATCCCGGACGCTGTTGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAATGgtgagaccga ... tgatctccag-
EST: gi|149079392|gb|EE168367.2|EE168367
EST:     AATCCCGGACGCTGTTGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAATG                         G
genomic: AATCCCGGACGCTGTTGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAATGgtgagaccga ... tgatctccag-
EST: gi|149079392|gb|EE168367.2|EE168367
EST:     AATCCCGGACGCTGTTGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAATG                         G
genomic: AATCCCGGACGCTGTTGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAATGgtgagaccga ... tgatctccag-
EST: gi|101399620|gb|EB821656.1|EB821656
EST:     AATCCCGGACGCTGTTGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAATG                         ATCTTCCAGGGTGGCCGTTGTTCTCGCCTCCTAAGGTGCAGTTGGACAAGT
genomic: AATCCCGGACGCTGTTGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAATGgtgagaccga ... tgatctccagATCTTCCAGGGTGGCCGTTGTTCTCGCCTCCTAAGGTGCAGTTGGACAAGT
EST: gi|71438193|gb|DR819243.1|DR819243
EST:     AATCCCGGACGCTGTTGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAATGGTGAGACCGAG               
genomic: AATCCCGGACGCTGTTGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAA---T--------Ggtgagaccga ...
EST: gi|71438193|gb|DR819243.1|DR819243
EST:     AATCCCGGACGCTGTTGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAATGGTGAGACCGAG               
genomic: AATCCCGGACGCTGTTGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAA---T--------Ggtgagaccga ...
EST: gi|71438193|gb|DR819243.1|DR819243
EST:     AATCCCGGACGCTGTTGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAATGGTGAGACCGAG               
genomic: AATCCCGGACGCTGTTGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAA---T--------Ggtgagaccga ...
EST: gi|71438193|gb|DR819243.1|DR819243
EST:     AATCCCGGACGCTGTTGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAATGGTGAGACCGAG               
genomic: AATCCCGGACGCTGTTGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAA---T--------Ggtgagaccga ...
EST: gi|71438193|gb|DR819243.1|DR819243
EST:     AATCCCGGACGCTGTTGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAATGGTGAGACCGAG               
genomic: AATCCCGGACGCTGTTGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAA---T--------Ggtgagaccga ...
EST: gi|148970848|gb|EE021623.2|EE021623
EST:     AATCCCGGACGCTGTTGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAATGGTGAGACCGAG               
genomic: AATCCCGGACGCTGTTGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAA---T--------Ggtgagaccga ...
EST: gi|148970848|gb|EE021623.2|EE021623
EST:     AATCCCGGACGCTGTTGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAATGGTGAGACCGAG               
genomic: AATCCCGGACGCTGTTGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAA---T--------Ggtgagaccga ...
EST: gi|148970848|gb|EE021623.2|EE021623
EST:     AATCCCGGACGCTGTTGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAATGGTGAGACCGAG               
genomic: AATCCCGGACGCTGTTGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAA---T--------Ggtgagaccga ...
EST: gi|148970848|gb|EE021623.2|EE021623
EST:     AATCCCGGACGCTGTTGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAATGGTGAGACCGAG               
genomic: AATCCCGGACGCTGTTGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAA---T--------Ggtgagaccga ...
EST: gi|148970848|gb|EE021623.2|EE021623
EST:     AATCCCGGACGCTGTTGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAATGGTGAGACCGAG               
genomic: AATCCCGGACGCTGTTGCTGCGCTCGCACAGGCTGCTGCAAAGGCAAA---T--------Ggtgagaccga ...


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attccccttctcagcaatctaaacctgtatgcttcttttcccttttgatctccagATCTTCCAGGGTGGCCGTTGTTCTCGCCTCCTAAGGTGCAGTTGGACAAGTGTACCAAGTGCTCCAGAGAATTCTGTTCTGCAATCAACTTCCGGAGGCA
                             tgcttcttttcccttt  CT-rich tract
               aatctaaa  TA-rich tract