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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagcacttaatcttcaataattagtcacagtagcatcatcactcactgtcatagtatgatattctaaaactgccacttacactgtgttccagTGTTTCTTTCCACGTGAAGTTGTGAAGCACATTGTCAACCCAGTTTTCGTTCTTAATCCAGCATATGATGCCTGGCAG

Basic information

species Zea mays
transcript GRMZM2G141873_T07
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G141873_T06 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os05g02120.1 (Oryza sativa), 3'ss of exon 8
gttagcacttaatcttcaataattagtcacagtagcatcatcactcactgtcatagtatgatattctaaaactgccacttacactgtgttccagTGTTTCTTTCCACGTGAAGTTGTGAAGCACATTGTCAACCCAGTTTTCGTTCTTAATCCAGCATATGATGCCTGGCAG
        ||| || |   ||   | | | |  || |   |  ||  |  | ||  |||| | | ||||| |     | |  ||| |||||||||| ||||| ||| |||||||||| ||| ||||  ||| |||||| || |||||||||||||| |||||||| ||||||
-------gttagtcat-ggtatgcatttatatcagtaatcttgctatccctgatcttatgctttactaaatcctggccattaactttgttccagTGCTTCTTCCCAAGTGAAGTTGTAAAGGACATCATCACCCCAGTATTTGTTCTTAATCCAGCGTATGATGCTTGGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71417999|gb|DR804277.1|DR804277
EST:     GTCTAAGGGAAAGGTTTTCGCATTGTAACTCAAACATGGACGCAGGCCAG                         TGTTTCTTTCCACGTGAAGTTGTGAAGCACATTGTCAACCCAGTTTTCGTT
genomic: GTCTAAGGGAAAGGTTTTCGCATTGTAACTCAAACATGGACGCAGGCCAGgttagcactt ... tgtgttccagTGTTTCTTTCCACGTGAAGTTGTGAAGCACATTGTCAACCCAGTTTTCGTT
EST: gi|71423226|gb|DR805987.1|DR805987
EST:     GTCTAAGGGAAAGGTTTTCGCATTGTAACTCAAACATGGACGCAGGCCAG                         TGTTTCTTTCCACGTGAAGTTGTGAAGCACATTGTCAACCCAGTTTTCGTT
genomic: GTCTAAGGGAAAGGTTTTCGCATTGTAACTCAAACATGGACGCAGGCCAGgttagcactt ... tgtgttccagTGTTTCTTTCCACGTGAAGTTGTGAAGCACATTGTCAACCCAGTTTTCGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcactcactgtcatagtatgatattctaaaactgccacttacactgtgttccagTGTTTCTTTCCACGTGAAGTTGTGAAGCACATTGTCAACCCAGTTTTCGTTCTTAATCCAGCATATGATGCCTGGCAG
                                    cacttac  putative branch site (score: 2)
                 tatgatattctaaaa  TA-rich tract