1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...agcgctaaactatcccaataagcttcacccctgaacatttttagtgcctacagtttctccacaagacaatgcccttaacaatattcttttactgacacagGGGAAGCTGTGTACGTTGATGATATCCCCGCTCCCAAAGATTGCCTCTATGGAGCATTTATCTACAGCACCCACCCTCATGCCCATGTAAAGGCTATCAA
species | Zea mays |
transcript | GRMZM2G141473_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTGGAAAACCAATTAAGAAAGCAGGTGCAGAGATCCCAGCTTCAG GGGAAGCTGTGTACGTTGATGATATCCCCGCTCCCAAAGATTGCCTCTATGEST: gi|18649274|gb|BM498093.1|BM498093
genomic: TTGGAAAACCAATTAAGAAAGCAGGTGCAGAGATCCAAGCTTCAGgtatacaatt ... actgacacagGGGAAGCTGTGTACGTTGATGATATCCCCGCTCCCAAAGATTGCCTCTATG
EST: GAGATCCAAGCTTCAG GGGAAGCTGTGTACGTTGATGATATCCCCGCTCCCAAAGATTGCCTCTATGEST: gi|18450448|gb|BM428726.1|BM428726
genomic: GAGATCCAAGCTTCAGgtatacaatt ... actgacacagGGGAAGCTGTGTACGTTGATGATATCCCCGCTCCCAAAGATTGCCTCTATG
EST: GCCAGTTGGAAAGCCAATTAAGAAAGCAGGTGCAGAGATCCAAGCTTCAG GGGAAGCTGTGTACGTTGATGATATCCCCGCTCCCAAAGATTGCCTCTATG
genomic: GCCAGTTGGAAAACCAATTAAGAAAGCAGGTGCAGAGATCCAAGCTTCAGgtatacaatt ... actgacacagGGGAAGCTGTGTACGTTGATGATATCCCCGCTCCCAAAGATTGCCTCTATG
gcctacagtttctccacaagacaatgcccttaacaatattcttttactgacacagGGGAAGCTGTGTACGTTGATGATATCCCCGCTCCCAAAGATTGCCTCTATGGAGCATTTATCTACAGCACCCACCCTCATGCCCATGTAAAGGCTATCAA
tactgac putative branch site (score: 43)
ttcttttact CT-rich tract
ttaacaatattctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agcgctaaactatcccaataagcttcacccctgaacatttttagtgcctacagtttctccacaagacaatgcccttaacaatattcttttactgacacagGGGAAGCTGTGTACGTTGATGATATCCCCGCTCCCAAAGATTGCCTCTATGGAGCATTTATCTACAGCACCCACCCTCATGCCCATGTAAAGGCTATCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - -gcttcac
- - - - - - - - - - - - - - ccctgaa
- - - - - - - - - - - - - - - - - - - - - - -gcctaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgccctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaata