1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gggtattaattaaatactgatatcaggcatggtaggacctgaatcggtaatggtcgtgctcgggaaatgtctgacttgttcctaccacttctaactccagGCAGTTATCTGACATGGAGGAGCACATGGGAAGACGAACAGTCGGCGGCCTGCTATTAACCAAGGGAGGATCAATTCTTCTCTTCAGAGAGGACGGTTCG
species | Zea mays |
transcript | GRMZM2G140924_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTTGGTTGTGCTATGAGCAGGCACATATATATCTAGACTGATTATAATAG GCAGTTATCTGACATGGAGGAGCACATGGGAAGACGAACAGTCGGCGGCCTEST: gi|211467871|gb|FL342149.1|FL342149
genomic: TTTGGTTGTGCTATGAGCAGGCACATATATATCTAGACTGATTATAATAGgtaaacggat ... ctaactccagGCAGTTATCTGACATGGAGGAGCACATGGGAAGACGAACAGTCGGCGGCCT
EST: TTTGGTTGTGCTATGAGCAGGCACATATATATCTAGACTGATTATAATAG GCAGTTATCTGACATGGAGGAGCACATGGGAAGACGAACAGTCGGCGGCCT
genomic: TTTGGTTGTGCTATGAGCAGGCACATATATATCTAGACTGATTATAATAGgtaaacggat ... ctaactccagGCAGTTATCTGACATGGAGGAGCACATGGGAAGACGAACAGTCGGCGGCCT
ggtaatggtcgtgctcgggaaatgtctgacttgttcctaccacttctaactccagGCAGTTATCTGACATGGAGGAGCACATGGGAAGACGAACAGTCGGCGGCCTGCTATTAACCAAGGGAGGATCAATTCTTCTCTTCAGAGAGGACGGTTCG
ttctaac putative branch site (score: 52)
ttcctaccacttct CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gggtattaattaaatactgatatcaggcatggtaggacctgaatcggtaatggtcgtgctcgggaaatgtctgacttgttcctaccacttctaactccagGCAGTTATCTGACATGGAGGAGCACATGGGAAGACGAACAGTCGGCGGCCTGCTATTAACCAAGGGAGGATCAATTCTTCTCTTCAGAGAGGACGGTTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - tactgat
- - - - - - - - - - - - aggcatg
- - - - - - - - - - - - - - - - - - - ctgaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - cgtgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgtctg