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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caaagccatggggcagtcccccctccccctcccgcttttttttttatgaaactcatctattatctttgtgtttattttgagcaattgttattttccgcagATGTATTCAACGGTTTGCCGCGTTGCAACAGTGCTTCAAACCAGATATACAGCTCCAGGATTCTGGCATGTTGGTCTGAACCTCTTCGTTGGAATAGAGA

Basic information

species Zea mays
transcript GRMZM2G140160_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G140160_T03 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os09g26400.1 (Oryza sativa), 3'ss of exon 1
caaagccatggggcagtcccccctccc----cctcccgcttttttttttatgaaactcatctattatctttgtgtttattttgagcaattgtta--ttttccgcagATGTATTCAACGGTTTGCCGCGTTGCAACAGTGCTTCAAACCAGATATACAGCTCCAGGATTCTGGCATGTTGGTCTGAACCTCTTCGTTGGAATAGAGA
        |||   ||    |  | ||     || ||    ||  | | ||  | |  ||| |      |  || | |||| |  ||||  ||   | ||  |||||||||||| || |||||||| || ||||| || ||||| || ||||||||||| || |||||||||| || |||||||||||||||| | || | |||||
------tttggattagcattcttttccatactctaccttcattaatatcatccatcatatcgacatatataatgctcatttagcacaatcttttgttctttggcagATGTATTCTACAGTTTGCCGTGTGGCAACTGTCCTTCAGACTAGATATACAGCACCTGGATTCTGGCGTGCTGGTCTGAACCTCTTCTTAGGTACAGAGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgaaactcatctattatctttgtgtttattttgagcaattgttattttccgcagATGTATTCAACGGTTTGCCGCGTTGCAACAGTGCTTCAAACCAGATATACAGCTCCAGGATTCTGGCATGTTGGTCTGAACCTCTTCGTTGGAATAGAGA
                                          ttattttcc  CT-rich tract
            tattatctttgtgttt  TA-rich tract