1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gttaatcttcttttggtggagcatctttaaacactgacagcagacgatttatatgagtgggtcatggaaattgatgtgaacatgtgctctattgcagATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAGAG
species | Zea mays |
transcript | GRMZM2G139462_T06 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAG ATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAEST: gi|78076648|gb|DV505082.1|DV505082
genomic: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAGgttaatcttc ... tctattgcagATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTA
EST: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAG ATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAEST: gi|76917142|gb|DV166699.1|DV166699
genomic: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAGgttaatcttc ... tctattgcagATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTA
EST: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAGAG ATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAEST: gi|211175205|gb|FL094962.1|FL094962
genomic: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAGgttaatcttc ... tctattgcagATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTA
EST: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAG ATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAEST: gi|76286637|gb|DV026205.1|DV026205
genomic: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAGgttaatcttc ... tctattgcagATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTA
EST: TAAGTGGGGAAGCTCCTGCCGGGAATCACACAGAAAACATCGACCCAAAG ATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAEST: gi|211173537|gb|FL094957.1|FL094957
genomic: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAGgttaatcttc ... tctattgcagATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTA
EST: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAG ATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAEST: gi|76013765|gb|DT940935.1|DT940935
genomic: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAGgttaatcttc ... tctattgcagATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTA
EST: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAG ATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAEST: gi|33467006|gb|CF244055.1|CF244055
genomic: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAGgttaatcttc ... tctattgcagATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTA
EST: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAG ATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAEST: gi|50335608|gb|CO530734.1|CO530734
genomic: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAGgttaatcttc ... tctattgcagATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTA
EST: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAG ATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAEST: gi|50338057|gb|CO533183.1|CO533183
genomic: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAGgttaatcttc ... tctattgcagATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTA
EST: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAG ATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAEST: gi|211173536|gb|FL094956.1|FL094956
genomic: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAGgttaatcttc ... tctattgcagATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTA
EST: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAG ATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAEST: gi|84980665|gb|DW531014.1|DW531014
genomic: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAGgttaatcttc ... tctattgcagATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTA
EST: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAG ATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAEST: gi|211175204|gb|FL094961.1|FL094961
genomic: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAGgttaatcttc ... tctattgcagATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTA
EST: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAG ATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAEST: gi|211175207|gb|FL094964.1|FL094964
genomic: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAGgttaatcttc ... tctattgcagATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTA
EST: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAG ATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAEST: gi|211175211|gb|FL094968.1|FL094968
genomic: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAGgttaatcttc ... tctattgcagATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTA
EST: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAG ATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAEST: gi|211175203|gb|FL094960.1|FL094960
genomic: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAGgttaatcttc ... tctattgcagATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTA
EST: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAG ATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAEST: gi|91056257|gb|EB166675.1|EB166675
genomic: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAGgttaatcttc ... tctattgcagATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTA
EST: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAG ATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAEST: gi|211175206|gb|FL094963.1|FL094963
genomic: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAGgttaatcttc ... tctattgcagATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTA
EST: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAG AT-ACAATGGCTATTGCAAGAGAAEST: gi|50326142|gb|CO521268.1|CO521268
genomic: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAGgttaatcttc ... tctattgcagATTACAATGGCTATTGCAAGAGAA
EST: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAG ATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAEST: gi|211173530|gb|FL094950.1|FL094950
genomic: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAGgttaatcttc ... tctattgcagATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTA
EST: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAG ATTACAATGGCTATTGCAAGAGAAGT-GCTTCTGTCACCAAACTAGGTGTAEST: gi|86466839|gb|DY233209.1|DY233209
genomic: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAGgttaatcttc ... tctattgcagATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTA
EST: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAAAAAACATCGACCCAAAG ATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAEST: gi|211175215|gb|FL094972.1|FL094972
genomic: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAGgttaatcttc ... tctattgcagATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTA
EST: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAG ATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAEST: gi|211175210|gb|FL094967.1|FL094967
genomic: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAGgttaatcttc ... tctattgcagATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTA
EST: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAG ATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAAEST: gi|78119797|gb|DV538181.1|DV538181
genomic: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAGgttaatcttc ... tctattgcagATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAA
EST: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAG ATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAEST: gi|78106046|gb|DV524464.1|DV524464
genomic: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAGgttaatcttc ... tctattgcagATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTA
EST: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAG ATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAEST: gi|211175212|gb|FL094969.1|FL094969
genomic: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAGgttaatcttc ... tctattgcagATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTA
EST: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAG ATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAEST: gi|74235299|gb|DT643213.1|DT643213
genomic: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAGgttaatcttc ... tctattgcagATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTA
EST: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAG ATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAEST: gi|211173535|gb|FL094955.1|FL094955
genomic: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAGgttaatcttc ... tctattgcagATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTA
EST: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAG ATTACAATGGCTATTGCAAGAGAAGEST: gi|71437591|gb|DR818641.1|DR818641
genomic: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAGgttaatcttc ... tctattgcagATTACAATGGCTATTGCAAGAGAAG
EST: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAG ATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAEST: gi|86468321|gb|DY234691.1|DY234691
genomic: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAGgttaatcttc ... tctattgcagATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTA
EST: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAAAAAACATCGACCCAAAG ATTACAATGGCTATTGCAAGAAAAGTTGCTTCTGTCACCAAACTAGGTGTAEST: gi|71766564|gb|DR964501.1|DR964501
genomic: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAGgttaatcttc ... tctattgcagATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTA
EST: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAG ATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAEST: gi|211173532|gb|FL094952.1|FL094952
genomic: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAGgttaatcttc ... tctattgcagATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTA
EST: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAG ATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAEST: gi|148960321|gb|EE153577.2|EE153577
genomic: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAGgttaatcttc ... tctattgcagATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTA
EST: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAG ATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAEST: gi|76285330|gb|DV024898.1|DV024898
genomic: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAGgttaatcttc ... tctattgcagATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTA
EST: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAG ATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAEST: gi|211173534|gb|FL094954.1|FL094954
genomic: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAGgttaatcttc ... tctattgcagATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTA
EST: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAG ATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAEST: gi|50331445|gb|CO526571.1|CO526571
genomic: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAGgttaatcttc ... tctattgcagATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTA
EST: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAG ATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAEST: gi|71433983|gb|DR815033.1|DR815033
genomic: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAGgttaatcttc ... tctattgcagATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTA
EST: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAG ATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAEST: gi|211173531|gb|FL094951.1|FL094951
genomic: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAGgttaatcttc ... tctattgcagATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTA
EST: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAG ATTACAATGGCTATTGGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGEST: gi|76291661|gb|DV031229.1|DV031229
genomic: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAGgttaatcttc ... tctattgcagATTACAATGGCTATTG-CAAGAGAAGTTGCTTCTGTCACCAAACTAGG
EST: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAG ATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAEST: gi|211175202|gb|FL094959.1|FL094959
genomic: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAGgttaatcttc ... tctattgcagATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTA
EST: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAG ATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTA
genomic: TAAGTGGGGAAGCTCTTGCCGGGAATCACACAGAAAACATCGACCCAAAGgttaatcttc ... tctattgcagATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTA
gacgatttatatgagtgggtcatggaaattgatgtgaacatgtgctctattgcagATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAGAG
aattgat putative branch site (score: 69)
ctctatt putative PPT
tttatatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaatcttcttttggtggagcatctttaaacactgacagcagacgatttatatgagtgggtcatggaaattgatgtgaacatgtgctctattgcagATTACAATGGCTATTGCAAGAGAAGTTGCTTCTGTCACCAAACTAGGTGTAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT