Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgttcactttctcctttactttatactatcaatatttcttcaacttatacaccatcagtaccaaaaaaaaaatcttatttattcaatccatagctgatacaaattttctaccctgttacctgaaaatagGTGAAACGTAATGGTGTGTCCATCTTCCTCATGCCATCTGGAACAATTGGCACACTTCGAGCACTCTGGGATGTCTTCCCTCTGTTCACAAATACTGCAT

Basic information

species Zea mays
transcript GRMZM2G139374_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G139374_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g58114.2 (Oryza sativa), 3'ss of exon 2
gtaagtgttcactttctcctttactttatactatcaatatttcttcaacttatacaccatcagtaccaaaaaaaaaatcttatttattcaatccatagctgatacaaattttc-taccctgttacctgaaaatagGTGAAACGTAATGGTGTGTCCATCTTCCTCATGCCATCTGGAACAATTGGCACACTTCGAGCACTCTGGGATGTCTTCCCTCTGTTCACAAATACTGCAT
                                                  ||    ||  | | | |          | | ||           ||   ||||||| || | | |   || |||||| || |||||| ||||| || || || ||||| ||||| |||||||||||||||||||| |||||| ||||||| |||||||| ||||| ||||| |||||||||  ||
-------------------------------------------------gtaagtccccgctgcagctgcttttgtttgtaatcagcatttctgatcattgatacacatatgcatgatcttttaccttaacatagGTAAAACGCAAAGGAGTATCCATATTCCTGATGCCATCTGGAACAATTGGAACACTTAGAGCACTTTGGGATGTTTTCCCCCTGTTTACAAATACTCAAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32823063|gb|CD962772.1|CD962772
EST:     AGCACACTCTTGATATCAAAGAATGGGAAAGCGAGGCTGAGTATGAGTAT                         GTGAAACGTAATGGTGTGTCCATCTTCCTCATGCCATCTGGAACAATTGGC
genomic: AGCACACTCTTGATATCAAAGAATGGGAAAGCGAGGCTGAGTATGAGTATgtaagtgttc ... ctgaaaatagGTGAAACGTAATGGTGTGTCCATCTTCCTCATGCCATCTGGAACAATTGGC
EST: gi|148952582|gb|EC898412.2|EC898412
EST:     AGCACACTCTTGATATCAAAGAATGGGAAAGCGAGGCTGAGTATGAGTAT                         GTGAAACGTAATGGTGTGTCCATCTTCCTCATGCCATCTGGAACAATTGGC
genomic: AGCACACTCTTGATATCAAAGAATGGGAAAGCGAGGCTGAGTATGAGTATgtaagtgttc ... ctgaaaatagGTGAAACGTAATGGTGTGTCCATCTTCCTCATGCCATCTGGAACAATTGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatttattcaatccatagctgatacaaattttctaccctgttacctgaaaatagGTGAAACGTAATGGTGTGTCCATCTTCCTCATGCCATCTGGAACAATTGGCACACTTCGAGCACTCTGGGATGTCTTCCCTCTGTTCACAAATACTGCAT
                 agctgat  putative branch site (score: 4)
                      atacaaattttcta  TA-rich tract