1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...cattttcttcttctatcataagtgctaggttgtcattttttactgcactcagttgttttatcttggttttctttaatatgtattccgttgtcatgtgcagATAGATGAGAATGTCCAGCGTGAGATAATTAACCATAGATCATTGAAGCACCCTAACATTATTAGGTTTAAAGAG
species | Zea mays |
transcript | GRMZM2G138861_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTCGTCGCCGTCAAGTACATCGAGCGCGGCGAGAAG ATAGATGAGAATGTCCAGCGTGAGATAATTAACCATAGATCATTGAAGCACEST: gi|87156814|gb|DY401603.1|DY401603
genomic: CTCGTCGCCGTCAAGTACATCGAGCGCGGCGAGAAGgtatcgctct ... tcatgtgcagATAGATGAGAATGTCCAGCGTGAGATAATTAACCATAGATCATTGAAGCAC
EST: CCGGCAACTTCGGCGTTGCCCGCCTCATGCGCGACCGCCGCACCAGCGAACTCGTCGCCGTCAAGTACATCGAGCGCGGCGAGAAGEST: gi|22818823|gb|BU498913.1|BU498913
genomic: GCCGCACCAGCGAACTCGTCGCCGTCAAGTACATCGAGCGCGGCGAGAAGgtatcgctct ... tcatgtgcagATAGATGAGAA
EST: GCCGCACCAGCGAACTCGTCGCCGTCAAGTACATCGAGCGCGGCGAGAAG ATAGATGAGAATGTCCAGCGTGAGATAATTAACCATAGATCATTGAAGCACEST: gi|26559766|gb|CA832001.1|CA832001
genomic: GCCGCACCAGCGAACTCGTCGCCGTCAAGTACATCGAGCGCGGCGAGAAGgtatcgctct ... tcatgtgcagATAGATGAGAATGTCCAGCGTGAGATAATTAACCATAGATCATTGAAGCAC
EST: GCCGCACCAGCGAACTCGTCGCCGTCAAGTACATCGAGCGCGGCGAGAAG ATAGATGAGAATGTCCAGCGTGAGATAATTAACCATAGATCATTGAAGCACEST: gi|6056615|gb|AW091020.1|AW091020
genomic: GCCGCACCAGCGAACTCGTCGCCGTCAAGTACATCGAGCGCGGCGAGAAGgtatcgctct ... tcatgtgcagATAGATGAGAATGTCCAGCGTGAGATAATTAACCATAGATCATTGAAGCAC
EST: GCCGCACCAGCGAACTCGTCGCCGTCAAGTACATCGAGCGCGGCGAGAAG ATAGATGAGAATGTCCAGCGTGAGATAATTAACCATAGATCATTGAAGCAC
genomic: GCCGCACCAGCGAACTCGTCGCCGTCAAGTACATCGAGCGCGGCGAGAAGgtatcgctct ... tcatgtgcagATAGATGAGAATGTCCAGCGTGAGATAATTAACCATAGATCATTGAAGCAC
cactcagttgttttatcttggttttctttaatatgtattccgttgtcatgtgcagATAGATGAGAATGTCCAGCGTGAGATAATTAACCATAGATCATTGAAGCACCCTAACATTATTAGGTTTAAAGAG
ctttaat putative branch site (score: 4)
ttttctttaatatgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cattttcttcttctatcataagtgctaggttgtcattttttactgcactcagttgttttatcttggttttctttaatatgtattccgttgtcatgtgcagATAGATGAGAATGTCCAGCGTGAGATAATTAACCATAGATCATTGAAGCACCCTAACATTATTAGGTTTAAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC