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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cctgaggatccgaagaagctggtgaataaattccgcactttgttttgttatatgaagagacttagtctctttctttcttggttgtcttctttttttacagGAGATGTGGTCAAGTTCAGATGTGACTGATAGTTCTAGTAATGAAGCTGGTCATGTAATAGCGACTACTGTTCACGGGCGCAACGGCCTGCCTAAACAG

Basic information

species Zea mays
transcript GRMZM2G138676_T01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5268846|gb|AI770810.1|AI770810
EST:     TGCTGGGAATGCGACTGAGGGATGCCAAGCCCGACACAGATGATGAAAGG                         GAGATGTGGTCAAGTTCAGATGTGACTGATAGTTCTAGTAATGAAGCTGGT
genomic: TGCTGGGAATGCGACTGAGGGATGCCAAGCCCGACACAGATGATGAAAGGgtaggtttct ... ttttttacagGAGATGTGGTCAAGTTCAGATGTGACTGATAGTTCTAGTAATGAAGCTGGT
EST: gi|6095487|gb|AW120154.1|AW120154
EST:     TGCTGGGAATGCGACTGAGGGATGCCAAGCCCGACACAGATGATGAAAGG                         GAGATGTGGTCAAGTTCAGATGTGACTGATAGTTCTAGTAATGAAGCTGGT
genomic: TGCTGGGAATGCGACTGAGGGATGCCAAGCCCGACACAGATGATGAAAGGgtaggtttct ... ttttttacagGAGATGTGGTCAAGTTCAGATGTGACTGATAGTTCTAGTAATGAAGCTGGT
EST: gi|211457740|gb|FL227180.1|FL227180
EST:     TGCTGGGAATGCGACTGAGGGATGCCAAGCCCGACACAGATGATGAAAGG                         GAGATGTGGTCAAGTTCAGATGTGACTGATAGTTCTAGTAATGAAGCTGGT
genomic: TGCTGGGAATGCGACTGAGGGATGCCAAGCCCGACACAGATGATGAAAGGgtaggtttct ... ttttttacagGAGATGTGGTCAAGTTCAGATGTGACTGATAGTTCTAGTAATGAAGCTGGT
EST: gi|71322558|gb|DR797956.1|DR797956
EST:     TGCTGGGAATGCGACTGAGGGATGCCAAGCCCGACACAGATGATGAAAGG                         GAGATGTGGTCAAGTTCAGATGTGACTGATAGTTCTAGTAATGAAGCTGGT
genomic: TGCTGGGAATGCGACTGAGGGATGCCAAGCCCGACACAGATGATGAAAGGgtaggtttct ... ttttttacagGAGATGTGGTCAAGTTCAGATGTGACTGATAGTTCTAGTAATGAAGCTGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttatatgaagagacttagtctctttctttcttggttgtcttctttttttacagGAGATGTGGTCAAGTTCAGATGTGACTGATAGTTCTAGTAATGAAGCTGGTCATGTAATAGCGACTACTGTTCACGGGCGCAACGGCCTGCCTAAACAG
               cttagtctctttcttt  CT-rich tract
                                         ttcttttttta  TA-rich tract