1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttgtctctaatttcctggctacttactaaaatgtacagggtccctgattgttgaatttgattctattttcctctctgaatgcagACAATTGATGGTTTCTTAGCTGTTCTAAATGTCACTGGTGGTAGTTTCTTCCCCACAACTCAGAAACTTCCATTCTCAGTAACAAGCATCGATGAGGATA
species | Zea mays |
transcript | GRMZM2G138425_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTGAGGAGTCTCTTTTATCTGGTCGATACTCGTATGGAAAAGACAGTCAG ACAATTGATGGTTTCTTAGCTGTTCTAAATGTCACTGGTGGTAGTTTCTTCEST: gi|211068522|gb|FL399012.1|FL399012
genomic: TTGAGGAGTCTCTTTTATCTGGTCGATACTCGTATGGAAAAGACAGTCAGgttgtctcta ... ctgaatgcagACAATTGATGGTTTCTTAGCTGTTCTAAATGTCACTGGTGGTAGTTTCTTC
EST: TTGAGGAGTCTCTTTTATCTGGTCGATACTCGTATGGAAAAGACAGTCAG ACAATTGATGGTTTCTTAGCTGTTCTAAATGTCACTGGTGGTAGTTTCTTCEST: gi|211107469|gb|FL390858.1|FL390858
genomic: TTGAGGAGTCTCTTTTATCTGGTCGATACTCGTATGGAAAAGACAGTCAGgttgtctcta ... ctgaatgcagACAATTGATGGTTTCTTAGCTGTTCTAAATGTCACTGGTGGTAGTTTCTTC
EST: TTGAGGAGTCTCTTTTATCTGGTCGATACTCGTATGGAAAAGACAGTCAG ACAATTGATGGTTTCTTAGCTGTTCTAAATGTCACTGGTGGTAGTTTCTTC
genomic: TTGAGGAGTCTCTTTTATCTGGTCGATACTCGTATGGAAAAGACAGTCAGgttgtctcta ... ctgaatgcagACAATTGATGGTTTCTTAGCTGTTCTAAATGTCACTGGTGGTAGTTTCTTC
aatgtacagggtccctgattgttgaatttgattctattttcctctctgaatgcagACAATTGATGGTTTCTTAGCTGTTCTAAATGTCACTGGTGGTAGTTTCTTCCCCACAACTCAGAAACTTCCATTCTCAGTAACAAGCATCGATGAGGATA
tttgattctattttcc CT-rich tract
aatttgattctatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgtctctaatttcctggctacttactaaaatgtacagggtccctgattgttgaatttgattctattttcctctctgaatgcagACAATTGATGGTTTCTTAGCTGTTCTAAATGTCACTGGTGGTAGTTTCTTCCCCACAACTCAGAAACTTCCATTCTCAGTAACAAGCATCGATGAGGATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT