1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gcagttgatacattcacaatgaaaggagagacatttttttaacaaccatcagatgccctattgtcctgcactcacgctgacagacctgcttctatttcagGTTTCTGACGAGAGTGTAAATGTAGATGTCGCGGCCTCACATCAAAGTGAAAATGGATCTATCTCTACTGTTAGTTCACTAGAATCAGAGAGGGCAGCAT
species | Zea mays |
transcript | GRMZM2G138342_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGCCGATTCCGCTCCCAACTCTTCCGAGCATCAGATCATTGGTCCACTCG GTTTCTGACGAGAGTGTAAATGTAGATGTCGCGGCCTCACATCAAAGTGAAEST: gi|91055675|gb|EB166093.1|EB166093
genomic: CGCCGATTCCGCTCCCAACTCTTCCGAGCATCAGATCATTGGTCCACTCGgtacgtccag ... tctatttcagGTTTCTGACGAGAGTGTAAATGTAGATGTCGCGGCCTCACATCAAAGTGAA
EST: CGCCGATTCCGCTCCCAACTCTTCCGAGCATCAGATCATTGGTCCACTCG GTTTCTGACGAGAGTGTAAATGTAGATGTCGCGGCCTCACATCAAAGTGAAEST: gi|78125415|gb|DV543799.1|DV543799
genomic: CGCCGATTCCGCTCCCAACTCTTCCGAGCATCAGATCATTGGTCCACTCGgtacgtccag ... tctatttcagGTTTCTGACGAGAGTGTAAATGTAGATGTCGCGGCCTCACATCAAAGTGAA
EST: CGCCGATTCCGCTCCCAACTCTTCCGAGCATCATATCATTGGTCCACTCG GTTTCTGACGAGAGTGTAAATGTAGATGTCGCGGCCTCACATCAAAGTGAAEST: gi|91876049|gb|EB406006.1|EB406006
genomic: CGCCGATTCCGCTCCCAACTCTTCCGAGCATCAGATCATTGGTCCACTCGgtacgtccag ... tctatttcagGTTTCTGACGAGAGTGTAAATGTAGATGTCGCGGCCTCACATCAAAGTGAA
EST: CGCCGATTCCGCTCCCAACTCTTCCGAGCATCAGATCATTGGTCCACTCG GTTTCTGACGAGAGTGTAAATGTAGATGTCGCGGCCTCACATCAAAGTGAAEST: gi|149009524|gb|EE041507.2|EE041507
genomic: CGCCGATTCCGCTCCCAACTCTTCCGAGCATCAGATCATTGGTCCACTCGgtacgtccag ... tctatttcagGTTTCTGACGAGAGTGTAAATGTAGATGTCGCGGCCTCACATCAAAGTGAA
EST: CGCCGATTCCGCTCCCAACTCTTCCGAGCATCAGATCATTGGTCCACTCG GTTTCTGACGAGAGTGTAAATGTAGATGTCGCGGCCTCACATCAAAGTGAA
genomic: CGCCGATTCCGCTCCCAACTCTTCCGAGCATCAGATCATTGGTCCACTCGgtacgtccag ... tctatttcagGTTTCTGACGAGAGTGTAAATGTAGATGTCGCGGCCTCACATCAAAGTGAA
ccatcagatgccctattgtcctgcactcacgctgacagacctgcttctatttcagGTTTCTGACGAGAGTGTAAATGTAGATGTCGCGGCCTCACATCAAAGTGAAAATGGATCTATCTCTACTGTTAGTTCACTAGAATCAGAGAGGGCAGCAT
cctgcttctatttc CT-rich tract
ttctattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcagttgatacattcacaatgaaaggagagacatttttttaacaaccatcagatgccctattgtcctgcactcacgctgacagacctgcttctatttcagGTTTCTGACGAGAGTGTAAATGTAGATGTCGCGGCCTCACATCAAAGTGAAAATGGATCTATCTCTACTGTTAGTTCACTAGAATCAGAGAGGGCAGCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
gcagttg
- - - - - cattcac
- - - - - - - - -aatgaaag
- - - - - - - - - - - - - - - - - - - - aacaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtcctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gacctgc