1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgtacttaaaaggtgatttagcctctccccgatatcttcctggcccctgggagcaattcagccccctattccagaatattgacaaagctgttactgatagGTTGTTGAAAGTGGTGGGAAGAACATCGAGGTTGCAGTGATGACAAAGAAGGATGGTCTCCGGGAACTTGAGGAGGCTGAGATTGATGAATATGTTGCTG
species | Zea mays |
transcript | GRMZM2G138128_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGACCTCCGGCAAGGAGACCATCAAGCTTGCTATTCGTGCACTTCTAGAG GTTGTTGAAGGTGGTGGGAAGAACATEST: gi|18450629|gb|BM428907.1|BM428907
genomic: AGACCTCCGGCAAGGAGACCATCAAGCTTGCTATTCGTGCACTTCTAGAGgtatatcata ... ttactgatagGTTGTTGAAAGTGGTGGGAAGAACAT
EST: AGACCTCCGGCAAGGAGACCATCAAGCTTGCTATTCGTGCACTTCTAGAG GTTGTTGAAAGTGGTGGGAAGAACATCGAGGTTGCAGTGATGACAAAGAAGEST: gi|211304635|gb|FL018755.1|FL018755
genomic: AGACCTCCGGCAAGGAGACCATCAAGCTTGCTATTCGTGCACTTCTAGAGgtatatcata ... ttactgatagGTTGTTGAAAGTGGTGGGAAGAACATCGAGGTTGCAGTGATGACAAAGAAG
EST: AGACCTCCGGCAAGGAGACCATCAAGCTTGCTATTCGTGCACTTCTAGAG GTTGTTGAAAGTGGTGGGAAGA-CATCGAGGTTGCAGTGEST: gi|76014708|gb|DT941878.1|DT941878
genomic: AGACCTCCGGCAAGGAGACCATCAAGCTTGCTATTCGTGCACTTCTAGAGgtatatcata ... ttactgatagGTTGTTGAAAGTGGTGGGAAGAACATCGAGGTTGCAGTG
EST: AGACCTCCGGCAAGGAGACCATCAAGCTTGCTATTCGTGCACTTCTAGAG GTTGTTGAAAGTGGTGGGAAGAACATCGAGGTTGCAGTGATGACAAAGAAGEST: gi|148952506|gb|EC898333.2|EC898333
genomic: AGACCTCCGGCAAGGAGACCATCAAGCTTGCTATTCGTGCACTTCTAGAGgtatatcata ... ttactgatagGTTGTTGAAAGTGGTGGGAAGAACATCGAGGTTGCAGTGATGACAAAGAAG
EST: AGACCTCCGGCAAGGAGACCATCAAGCTTGCTATTCGTGCACTTCTAGAG GTTGTTGAAAGTGGTGGGAAGAACATCGAGGTTGCAGTGATGACAAAGAAGEST: gi|40336967|gb|CK371037.1|CK371037
genomic: AGACCTCCGGCAAGGAGACCATCAAGCTTGCTATTCGTGCACTTCTAGAGgtatatcata ... ttactgatagGTTGTTGAAAGTGGTGGGAAGAACATCGAGGTTGCAGTGATGACAAAGAAG
EST: AGACCTCCGGCAAGGAGACCATCAAGCTTGCTATTCGTGCACTTCTAGAG GTTGTTGAAAGTGGTGGGAAGAACATCGAGGTTGCAGTGATGACAAAGAAGEST: gi|149051858|gb|EE155986.2|EE155986
genomic: AGACCTCCGGCAAGGAGACCATCAAGCTTGCTATTCGTGCACTTCTAGAGgtatatcata ... ttactgatagGTTGTTGAAAGTGGTGGGAAGAACATCGAGGTTGCAGTGATGACAAAGAAG
EST: AGACCTCCGGCAAGGAGACCATCAAGCTTGCTATTCGTGCACTTCTAGAG GTTGTTGGAAAGTGGTGGGAAGAACATCGAGGGTGCAGTGATGACAAAGAAEST: gi|91873762|gb|EB403719.1|EB403719
genomic: AGACCTCCGGCAAGGAGACCATCAAGCTTGCTATTCGTGCACTTCTAGAGgtatatcata ... ttactgatagGTTGTTG-AAAGTGGTGGGAAGAACATCGAGGTTGCAGTGATGACAAAGAA
EST: AGACCTCCGGCAAGGAGACCATCAAGCTTGCTATTCGTGCACTTCTAGAG GTTGTTGAAAGTGGTGGGAAGAACATCGAGGTTGCAGTGATGACAAAGAAGEST: gi|211389688|gb|FL031639.1|FL031639
genomic: AGACCTCCGGCAAGGAGACCATCAAGCTTGCTATTCGTGCACTTCTAGAGgtatatcata ... ttactgatagGTTGTTGAAAGTGGTGGGAAGAACATCGAGGTTGCAGTGATGACAAAGAAG
EST: AGACCTCCGGCAAGGAGGCCATCAAGCTTGCTATTCGTGCACTTCTAGAG GTTGTTGAAAGTGGTGGGAAGAACATCGAGGTTGCAGTGATGACAAAGAAGEST: gi|67039736|gb|CO465991.1|CO465991
genomic: AGACCTCCGGCAAGGAGACCATCAAGCTTGCTATTCGTGCACTTCTAGAGgtatatcata ... ttactgatagGTTGTTGAAAGTGGTGGGAAGAACATCGAGGTTGCAGTGATGACAAAGAAG
EST: AGACCTCCGGCAAGGAGACCATCAAGCTTGCTATTCGTGCACTTCTAGAG GTTGTTGAAAGTGGTGGGAAGAACATCGAGGTTGCAGTGATGACAAAGAAG
genomic: AGACCTCCGGCAAGGAGACCATCAAGCTTGCTATTCGTGCACTTCTAGAGgtatatcata ... ttactgatagGTTGTTGAAAGTGGTGGGAAGAACATCGAGGTTGCAGTGATGACAAAGAAG
cctgggagcaattcagccccctattccagaatattgacaaagctgttactgatagGTTGTTGAAAGTGGTGGGAAGAACATCGAGGTTGCAGTGATGACAAAGAAGGATGGTCTCCGGGAACTTGAGGAGGCTGAGATTGATGAATATGTTGCTG
tattgac putative branch site (score: 2)
agaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtacttaaaaggtgatttagcctctccccgatatcttcctggcccctgggagcaattcagccccctattccagaatattgacaaagctgttactgatagGTTGTTGAAAGTGGTGGGAAGAACATCGAGGTTGCAGTGATGACAAAGAAGGATGGTCTCCGGGAACTTGAGGAGGCTGAGATTGATGAATATGTTGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG