Sequence
atgc intronic sequence ATGC exonic sequencegtgaagaacgtatgcttgactcttgtgcataagaaggcaagcacatgttctttcatgcatcatcgggcttcctcaattaatcctacttcctatagttttgcgagcaaaccatctcagattgatagctatttctgcagCTAGTTTATAACAGGAGCGATGAAGTTGGTATTGTCCTCTTTGGTACTAAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G137968_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os03g63920.1 (Oryza sativa), 3'ss of exon 2
gtgaagaacgtatgcttgactcttgtgcataagaaggcaagcacatgttctttcatgcatcatcgggcttcctcaattaatcctacttcctatagttttgcgagcaaaccatctcagattgatagctatttctgcagCTAGTTTATAACAGGAGCGATGAAGTTGGTATTGTCCTCTTTGGTACTAAAG
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-gcaagcacacactatttccattttaacttcccag---atgcaaatgctactacctggccacctgcaattcatca--taa-cttgtaaccaatcagcct-caagctaacccccctgccttttcccccctctctgcagCTAGTTTATAATAGGAGTGATGAGATCGGTGTTGTCCTTTTTGGAACTAAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71766540|gb|DR964477.1|DR964477EST: TGATTTTGCTGTTGGATGTTGGGCCTTCGATGCATGGAGTGCTGCTAGAG CTAGTTTATAACAGGAGCGATGAAGTTGGTATTGTCCTCTTTGGTACTAAA
genomic: TGATTTTGCTGTTGGATGTTGGGCCTTCGATGCATGGAGTGCTGCTAGAGgtgaagaacg ... atttctgcagCTAGTTTATAACAGGAGCGATGAAGTTGGTATTGTCCTCTTTGGTACTAAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctacttcctatagttttgcgagcaaaccatctcagattgatagctatttctgcagCTAGTTTATAACAGGAGCGATGAAGTTGGTATTGTCCTCTTTGGTACTAAAG
gattgat putative branch site (score: 4)
ctatttct putative PPT
tatagtttt TA-rich tract