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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgtacacgctctagcttgacaaatggtcagccgttgatctctgctatttgcaaccagagcttaagttcatcttggattcatgcagGTCCTGGTGCTCCAACCATATTCAACTGCGTAAGGCCACCCTGTCATGCTTGACTGGTCCTCTTGTGATATGTTCATGTTAATAGCATGATGTCTTTTGT

Basic information

species Zea mays
transcript GRMZM2G137930_T03
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33467853|gb|CF244902.1|CF244902
EST:     CATGTCCAGGAGGTCTGTTGCTGCACACCCTTGGCATGATCTGGAGATAG                         GTCCTGGTGCTCCAACCATATTCAACTGCGTAAGGCCACCCTGTCATGCTT
genomic: CATGTCCAGGAGGTCTGTTGCTGCACACCCTTGGCATGATCTGGAGATAGgtattgtaca ... attcatgcagGTCCTGGTGCTCCAACCATATTCAACTGCGTAAGGCCACCCTGTCATGCTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccgttgatctctgctatttgcaaccagagcttaagttcatcttggattcatgcagGTCCTGGTGCTCCAACCATATTCAACTGCGTAAGGCCACCCTGTCATGCTTGACTGGTCCTCTTGTGATATGTTCATGTTAATAGCATGATGTCTTTTGT
 cgttgat  putative branch site (score: 5)
                              ttaagtt  TA-rich tract