Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211153963|gb|FL101500.1|FL101500EST: CCGTGTTACCACACGTGGTCAATGTTGGACTCTGTCATGAGTGTTACAAT GTTGTCTTGATGGCGCCCGCTGTAGAAGCCGTGAAGGAGACAGGCACCTTC
genomic: CCGTGTTACCACACGTGGTCAATGTTGGACTCTGTCATGAGTGTTACAATgtgtgttctt ... tccttggcagGTTGTCTTGATGGCGCCCGCTGTAGAAGCCGTGAAGGAGACAGGCACCTTC
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 2 RNA-Seq libraries.
Block sizes:
20 (upstream exon),
30 (downstream exon)
Score:
1TATCAACTCTTCCTAGTGTAATTGCTGGTGGACCATGTCTTCGGTATGGACCGTGTTACCACACGTGGTCAATGTTGGACTCTGTCATGAGTGTTACAATgtgtgttctt ... tccttggcagGTTGTCTTGATGGCGCCCGCTGTAGAAGCCGTGAAGGAGACAGGCACCTTCCAGAAGGTTCCTGCCTTGAACGAAAGGATACTGTCATCCATGTCCAGGA
Block sizes:
47 (upstream exon),
11 (downstream exon)
Score:
5TATCAACTCTTCCTAGTGTAATTGCTGGTGGACCATGTCTTCGGTATGGACCGTGTTACCACACGTGGTCAATGTTGGACTCTGTCATGAGTGTTACAATgtgtgttctt ... tccttggcagGTTGTCTTGATGGCGCCCGCTGTAGAAGCCGTGAAGGAGACAGGCACCTTCCAGAAGGTTCCTGCCTTGAACGAAAGGATACTGTCATCCATGTCCAGGA
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atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cgaagaccaattcaaatcaacttaaccggagaacttgtattgtaatccttggcagGTTGTCTTGATGGCGCCCGCTGTAGAAGCCGTGAAGGAGACAGGCACCTTCCAGAAGGTTCCTGCCTTGAACGAAAGGATACTGTCATCCATGTCCAGGA
acttaac putative branch site (score: 5)
tcctt putative PPT
aattcaaat TA-rich tract