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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagcgcactgcagagtttggcaattcgtttaattaattaatcagtgcaacgtactatatcttgatgctcccaaacattatttttttttcttcttctttgtcagCTGCAACTTCTGGGATGTCTGAGCGGTGTGGAGATGGTGCTCAAGGATGTGGGGTACCCAGTGAAACTAGGTAGCGGCGTGGCAGCCGCGGCGGCGTACC

Basic information

species Zea mays
transcript GRMZM2G137868_T04
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G137868_T04 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os08g39300.2 (Oryza sativa), 3'ss of exon 6
gtagcgcactgcagagtttggcaattcgtttaattaattaatcagtgcaacgtactatatcttgatgctcccaaacattatttttttttcttcttctttgtcagCTGCAACTTCTGGGATGTCTGAGCGGTGTGGAGATGGTGCTCAAGGATGTGGGGTACCCAGTGAAACTAGGTAGCGGCGTGGCAGCCGCGGCGGCGTACC
      || | || |      ||| ||     ||  |||      || ||  || |  | |   ||   |  |  |||    ||  | ||     || || ||||||||| |  ||||    ||||| || ||||||||||||||||||||  | || ||||| ||||| || ||   ||||||||| || |||||||||||||
----gtcagtacacac----acaactctgcagatcgatttgcagatgaaaattattgcagcaacat---ctgactcatctcattgatctccataactctg-cagCTGCAATTGATGGGTGCCCTGAGTGGAGTGGAGATGGTGCTCAAGGACATCGGCTACCCGGTGAAGCTCGGCTCCGGCGTGGCGGCGGCGGCGGCGTACC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71764609|gb|DR962546.1|DR962546
EST:     AGGTCGCCGGGAAGGTCTTCAGGATCGGCCATCTCGGCAACCTCAACGAG                         CTGCAACTTTTGGGATGTTTGAGCGGTGTGGAGATGGTGCTCAAGGATGTG
genomic: AGGTCGCCGGGAAGGTCTTCAGGATCGGCCATCTCGGCAACCTCAACGAGgtagcgcact ... tctttgtcagCTGCAACTTCTGGGATGTCTGAGCGGTGTGGAGATGGTGCTCAAGGATGTG
EST: gi|50327007|gb|CO522133.1|CO522133
EST:     AGGTCGCCGGGAAGGTTTTCAGGATCGGCCATCTCGGCAACCTCAACGAG                         CTGCAACTTTTGGGATGTTTGAGCGGTGTGGAGATGGTGCTCAAGGATGTG
genomic: AGGTCGCCGGGAAGGTCTTCAGGATCGGCCATCTCGGCAACCTCAACGAGgtagcgcact ... tctttgtcagCTGCAACTTCTGGGATGTCTGAGCGGTGTGGAGATGGTGCTCAAGGATGTG
EST: gi|211069553|gb|FL431294.1|FL431294
EST:     AGGTCGCCGGGAAGGTCTTCAGGATCGGCCATCTCGGCAACCTCAACGAG                         CTGCAACTTCTGGGATGTCTGAGCGGTGTGGAGATGGTGCTCAAGGATGTG
genomic: AGGTCGCCGGGAAGGTCTTCAGGATCGGCCATCTCGGCAACCTCAACGAGgtagcgcact ... tctttgtcagCTGCAACTTCTGGGATGTCTGAGCGGTGTGGAGATGGTGCTCAAGGATGTG
EST: gi|74243687|gb|DT651601.1|DT651601
EST:     AGGTCGCCGGGAAGGTCTTCAGGATCGGCCATCTCGGCAACCTCAACGAG                         CTGCAACTTCTGGGATGTCTGAGCGGTGTGGAGATGGTGCTCAAGGATGTG
genomic: AGGTCGCCGGGAAGGTCTTCAGGATCGGCCATCTCGGCAACCTCAACGAGgtagcgcact ... tctttgtcagCTGCAACTTCTGGGATGTCTGAGCGGTGTGGAGATGGTGCTCAAGGATGTG
EST: gi|149075667|gb|EE164209.2|EE164209
EST:     AGGTCGCCGGGAAGGTCTTCAGGATCGGCCATCTCGGCAACCTCAACGAG                         CTGCAACTTCTGGGATGTCTGAGCGGTGTGGAGATGGTGCTCAAGGATGTG
genomic: AGGTCGCCGGGAAGGTCTTCAGGATCGGCCATCTCGGCAACCTCAACGAGgtagcgcact ... tctttgtcagCTGCAACTTCTGGGATGTCTGAGCGGTGTGGAGATGGTGCTCAAGGATGTG
EST: gi|71442238|gb|DR823288.1|DR823288
EST:     AGGTCGCCGGGAAGGTTTTCAGGATCGGCCATTTCGGCAACCTCAACGAG                         CTGCAACTTTTGGGATGTTTGAGCGGTGTGGAGATGGTGCTCAAGGATGTG
genomic: AGGTCGCCGGGAAGGTCTTCAGGATCGGCCATCTCGGCAACCTCAACGAGgtagcgcact ... tctttgtcagCTGCAACTTCTGGGATGTCTGAGCGGTGTGGAGATGGTGCTCAAGGATGTG
EST: gi|149082012|gb|EE171182.2|EE171182
EST:     AGGTCGCCGGGAAGGTCTTCAGGATCGGCCATCTCGGCAACCTCAACGAG                         CTGCAACTTTTGGGATGTCTGAGCGGTGTGGAGATGGTGCTCAAGGATGTG
genomic: AGGTCGCCGGGAAGGTCTTCAGGATCGGCCATCTCGGCAACCTCAACGAGgtagcgcact ... tctttgtcagCTGCAACTTCTGGGATGTCTGAGCGGTGTGGAGATGGTGCTCAAGGATGTG
EST: gi|91048584|gb|EB159002.1|EB159002
EST:     AGGTCGCCGGGAAGGTCTTCAGGATCGGCCATCTCGGCAACCTCAACGAG                         CTGCAACTTCTGGGATGTCTGAGCGGTGTGGAGATGGTGCTCAAGGATGTG
genomic: AGGTCGCCGGGAAGGTCTTCAGGATCGGCCATCTCGGCAACCTCAACGAGgtagcgcact ... tctttgtcagCTGCAACTTCTGGGATGTCTGAGCGGTGTGGAGATGGTGCTCAAGGATGTG
EST: gi|15215521|gb|BI431326.1|BI431326
EST:     AGATCGCCGGGAAGGTCTTCAGGATCGGCCATCTCGGCAACCTCAACGAG                         CTGCAACTTCTGGGATGTCTGAGCGGTGTGGAGATGGTGCTCAAGGATGTG
genomic: AGGTCGCCGGGAAGGTCTTCAGGATCGGCCATCTCGGCAACCTCAACGAGgtagcgcact ... tctttgtcagCTGCAACTTCTGGGATGTCTGAGCGGTGTGGAGATGGTGCTCAAGGATGTG
EST: gi|76918895|gb|DV167498.1|DV167498
EST:     AGGTCGCCGGGAAGGTCTTCAGGATCGGCCATCTCGGCAACCTCAACGAG                         CTGCAACTTCTGGGATGTCTGAGCGGTGTGGAGATGGTGCTCAAGGATGTG
genomic: AGGTCGCCGGGAAGGTCTTCAGGATCGGCCATCTCGGCAACCTCAACGAGgtagcgcact ... tctttgtcagCTGCAACTTCTGGGATGTCTGAGCGGTGTGGAGATGGTGCTCAAGGATGTG
EST: gi|9953960|gb|BE640543.1|BE640543
EST:     AGGTCGCCGGGAGGGTCTTCAGGATCGGCCATCTCGGCAACCTCAACGAG                         CTGCAACTGCTGGGATGTCTGAGCGGCGTGGAGATGGTGCTCAAGGATGTG
genomic: AGGTCGCCGGGAAGGTCTTCAGGATCGGCCATCTCGGCAACCTCAACGAGgtagcgcact ... tctttgtcagCTGCAACTTCTGGGATGTCTGAGCGGTGTGGAGATGGTGCTCAAGGATGTG
EST: gi|45848004|gb|CN071947.1|CN071947
EST:     AGATCGCCGGGAAGGTCTTCAGGATCGGCCATCTCGGCAACCTCAACGAG                         CTGCAACTTCTGGGATGTCTGAGCGGTGTGGAGATGGTGCTCAAGGATGTG
genomic: AGGTCGCCGGGAAGGTCTTCAGGATCGGCCATCTCGGCAACCTCAACGAGgtagcgcact ... tctttgtcagCTGCAACTTCTGGGATGTCTGAGCGGTGTGGAGATGGTGCTCAAGGATGTG
EST: gi|78109037|gb|DV527454.1|DV527454
EST:     AGGTCGCCGGGAAGGTCTTCAGGATCGGCCATCTCGGCAACCTCAACGAG                         CTGCAACTTTTGGGATGTCTGAGCGGTGTGGAGATGGTGCTCAAGGATGTG
genomic: AGGTCGCCGGGAAGGTCTTCAGGATCGGCCATCTCGGCAACCTCAACGAGgtagcgcact ... tctttgtcagCTGCAACTTCTGGGATGTCTGAGCGGTGTGGAGATGGTGCTCAAGGATGTG
EST: gi|148959060|gb|EC905218.2|EC905218
EST:     AGGTCGCCGGGAAGGTTTTCAGGATCGGCCATTTCGGCAACCTCAACGAG                         CTGCAACTTTTGGGATGTTTGAGCGGTGTGGAGATGGTGCTCAAGGATGTG
genomic: AGGTCGCCGGGAAGGTCTTCAGGATCGGCCATCTCGGCAACCTCAACGAGgtagcgcact ... tctttgtcagCTGCAACTTCTGGGATGTCTGAGCGGTGTGGAGATGGTGCTCAAGGATGTG
EST: gi|149072518|gb|EE160797.2|EE160797
EST:     AGGTCGCCGGGAAGGTCTTCAGGATCGGCCATCTCGGCAACCTCAACGAG                         CTGCAACTTTTGGGATGTTTGAGCGGTGTGGAGATGGTGCTCAAGGATGTG
genomic: AGGTCGCCGGGAAGGTCTTCAGGATCGGCCATCTCGGCAACCTCAACGAGgtagcgcact ... tctttgtcagCTGCAACTTCTGGGATGTCTGAGCGGTGTGGAGATGGTGCTCAAGGATGTG
EST: gi|149102927|gb|EE288278.2|EE288278
EST:     AGGTCGCCGGGAAGGTCTTCAGGATCGGCCATCTCGGCAACCTCAACGAG                         CTGCAACTTCTGGGATGTCTGAGCGGTGTGGAGATGGTGCTCAAGGATGTG
genomic: AGGTCGCCGGGAAGGTCTTCAGGATCGGCCATCTCGGCAACCTCAACGAGgtagcgcact ... tctttgtcagCTGCAACTTCTGGGATGTCTGAGCGGTGTGGAGATGGTGCTCAAGGATGTG
EST: gi|211101250|gb|FL450183.1|FL450183
EST:     AGGTCGCCGGGAAGGTCTTCAGGATCGGCCATCTCGGCAACCTCAACGAG                         CTGCAACTTCTGGGATGTCTGAGCGGTGTGGAGATGGTGCTCAAGGATGTG
genomic: AGGTCGCCGGGAAGGTCTTCAGGATCGGCCATCTCGGCAACCTCAACGAGgtagcgcact ... tctttgtcagCTGCAACTTCTGGGATGTCTGAGCGGTGTGGAGATGGTGCTCAAGGATGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acgtactatatcttgatgctcccaaacattatttttttttcttcttctttgtcagCTGCAACTTCTGGGATGTCTGAGCGGTGTGGAGATGGTGCTCAAGGATGTGGGGTACCCAGTGAAACTAGGTAGCGGCGTGGCAGCCGCGGCGGCGTACC
          tcttgat  putative branch site (score: 4)
                          cattatttttttttct  putative PPT
                       aaacattatttttttt  TA-rich tract