1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagatttgccccgaagcaagattgagcaatctggtttgtttaatgcttaatatatatatatatatatatatatatattttaaatttatagGGAGGAATGCAAGTGCAATGCTGTCCGGTTCTTTGCGATTATATCATCACAGCGATCTGGAAGTGGCTGGTTTGAAACCCTTCTTAACAGCCACATGAAT
species | Zea mays |
transcript | GRMZM2G136538_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCTTCTGAGGTTCAATTTGCGCATTACCCTCAACCGACAACTTACAGCAG GGAGGAATGCAAGTGCAATGCTGTCCGGTTCTTTGCGATTATATCATCACAEST: gi|76910514|gb|DV163907.1|DV163907
genomic: CCTTCTGAGGTTCAATTTGCGCATTACCCTCAACCGACAACTTACAGCAGgtgagatttg ... aaatttatagGGAGGAATGCAAGTGCAATGCTGTCCGGTTCTTTGCGATTATATCATCACA
EST: CCTTCTGAGGTTCAATTTGCGCATTACCCTCAACCGACAACTTACAGCAG GGAGGAATGCAAGTGCAATGCTGTCCGGTTCTTTGCGATTATATCATCACAEST: gi|61119622|gb|DN560583.1|DN560583
genomic: CCTTCTGAGGTTCAATTTGCGCATTACCCTCAACCGACAACTTACAGCAGgtgagatttg ... aaatttatagGGAGGAATGCAAGTGCAATGCTGTCCGGTTCTTTGCGATTATATCATCACA
EST: CCTTCTGAGGTTCAATTTGCGCATTACCCTCAACCGACGACTTACAGCAG GGAGGAATGCAAGTGCAATGCTGTCCGGTTCTTTGCGATTATATCATCACA
genomic: CCTTCTGAGGTTCAATTTGCGCATTACCCTCAACCGACAACTTACAGCAGgtgagatttg ... aaatttatagGGAGGAATGCAAGTGCAATGCTGTCCGGTTCTTTGCGATTATATCATCACA
ttgtttaatgcttaatatatatatatatatatatatatatattttaaatttatagGGAGGAATGCAAGTGCAATGCTGTCCGGTTCTTTGCGATTATATCATCACAGCGATCTGGAAGTGGCTGGTTTGAAACCCTTCTTAACAGCCACATGAAT
gcttaat putative branch site (score: 14)
ttaatatatatatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagatttgccccgaagcaagattgagcaatctggtttgtttaatgcttaatatatatatatatatatatatatatattttaaatttatagGGAGGAATGCAAGTGCAATGCTGTCCGGTTCTTTGCGATTATATCATCACAGCGATCTGGAAGTGGCTGGTTTGAAACCCTTCTTAACAGCCACATGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG