1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgactgcggaggctcccccatctggtttccacactacgttattcctgatactgatgcttagtttcattttttttctctcaattccatttggtggttcgggcgtctttgggtttgtagAAGGAGGATCTTAGGAAGGTGATGGAGCTGCTAGGGTTGAGGGAGCACCATGCCCGGACGCTCCTCATCCACTACCGCTGGGACGTGGAGAGGATTTTTG
species | Zea mays |
transcript | GRMZM2G136293_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTGATCACCAAGGAATCCCTCTTGGCAGCGCAG AAGGAGGATCTTAGGAAGGTGATGGAGCTGCTAGGGTTGAGGGAGCACCATEST: gi|211291472|gb|FL225663.1|FL225663
genomic: GTGATCACCAAGGAATCCCTCTTGGCAGCGCAGgtgactgcgg ... gggtttgtagAAGGAGGATCTTAGGAAGGTGATGGAGCTGCTAGGGTTGAGGGAGCACCAT
EST: GTGATCACCAAGGAATCCCTCTTGGCAGCGCAG AAGGAGGATCTTAGGAAGGTGATGGAGCTGCTAGGGTTGAGGGAGCACCATEST: gi|71437550|gb|DR818600.1|DR818600
genomic: GTGATCACCAAGGAATCCCTCTTGGCAGCGCAGgtgactgcgg ... gggtttgtagAAGGAGGATCTTAGGAAGGTGATGGAGCTGCTAGGGTTGAGGGAGCACCAT
EST: GTGATCACCAAGGAATCCCTCTTGGCAGCGCAG AAGGAGGATCTTAGGAAGGTGATGGAGCTGCTAGGGTTGAGGGAGCACCATEST: gi|74243001|gb|DT650915.1|DT650915
genomic: GTGATCACCAAGGAATCCCTCTTGGCAGCGCAGgtgactgcgg ... gggtttgtagAAGGAGGATCTTAGGAAGGTGATGGAGCTGCTAGGGTTGAGGGAGCACCAT
EST: GTGATCACCAAGGAATCCCTCTTGGCAGCGCAG AAGGAGGATCTTAGGAAGGTGATGGAGCTGCTAGGGTTGAGGGAGCACCAT
genomic: GTGATCACCAAGGAATCCCTCTTGGCAGCGCAGgtgactgcgg ... gggtttgtagAAGGAGGATCTTAGGAAGGTGATGGAGCTGCTAGGGTTGAGGGAGCACCAT
ttcattttttttctctcaattccatttggtggttcgggcgtctttgggtttgtagAAGGAGGATCTTAGGAAGGTGATGGAGCTGCTAGGGTTGAGGGAGCACCATGCCCGGACGCTCCTCATCCACTACCGCTGGGACGTGGAGAGGATTTTTG
tttttttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgactgcggaggctcccccatctggtttccacactacgttattcctgatactgatgcttagtttcattttttttctctcaattccatttggtggttcgggcgtctttgggtttgtagAAGGAGGATCTTAGGAAGGTGATGGAGCTGCTAGGGTTGAGGGAGCACCATGCCCGGACGCTCCTCATCCACTACCGCTGGGACGTGGAGAGGATTTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
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