1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atatattttatatttgaaaggtattcacagccaccggttattttcttgtgttgttcaagtttattattttgggctagttactaacttaaacttcctatagGGTTATTTGATATGAGCATTGCATCAGACGATGCTGGTAAAGAGATTGTTAAATGTATGAACATGGCTAAAGATGGGATACATGCAGTTCTAATGGTTTT
species | Zea mays |
transcript | GRMZM2G136178_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAGCACTACCCTGATGGACGGCCGGACCATCAATGTTATTGATACACCAG GGTTATTTGATATGAGCATTGCATCAGACGATGCTGGTAAAGAGATTGTTAEST: gi|211324170|gb|FK968426.1|FK968426
genomic: AAGCACTACCCTGATGGACGGCCGGACCATCAATGTTATTGATACACCAGgtaagacttc ... cttcctatagGGTTATTTGATATGAGCATTGCATCAGACGATGCTGGTAAAGAGATTGTTA
EST: AAGCACTACCCTGATGGACGGCCGGACCATCAATGTTATTGATACACCAG GGTTATTTGATATGAGCATTGCATCAGACGATGCTGGTAAAGAGATTGTTAEST: gi|60396244|gb|DN229113.1|DN229113
genomic: AAGCACTACCCTGATGGACGGCCGGACCATCAATGTTATTGATACACCAGgtaagacttc ... cttcctatagGGTTATTTGATATGAGCATTGCATCAGACGATGCTGGTAAAGAGATTGTTA
EST: TGGACGGCCGGACCATCAATGTTATTGATACACCAG GGTTATTTGATATGAGCATTGCATCAGACGATGCTGGTAAAGAGATTGTTAEST: gi|67030328|gb|CO459077.1|CO459077
genomic: TGGACGGCCGGACCATCAATGTTATTGATACACCAGgtaagacttc ... cttcctatagGGTTATTTGATATGAGCATTGCATCAGACGATGCTGGTAAAGAGATTGTTA
EST: AAGCACTACCCTGATGGACGGCCGGACCATCAATGTTATTGATACACCAG GGTTATTTGATATGAGCATTGCATCAGACGATGCTGGTAAAGAGATTGTTAEST: gi|211324166|gb|FK968422.1|FK968422
genomic: AAGCACTACCCTGATGGACGGCCGGACCATCAATGTTATTGATACACCAGgtaagacttc ... cttcctatagGGTTATTTGATATGAGCATTGCATCAGACGATGCTGGTAAAGAGATTGTTA
EST: AAGCACTACCCTGATGGACGGCCGGACCATCAATGTTATTGATACACCAG GGTTATTTGATATGAGCATTGCEST: gi|18660487|gb|BM500887.1|BM500887
genomic: AAGCACTACCCTGATGGACGGCCGGACCATCAATGTTATTGATACACCAGgtaagacttc ... cttcctatagGGTTATTTGATATGAGCATTGC
EST: AGCACTACCCTGATGGACGGCCGGACCATCAATGTTATTGATACACCANG GGT-ATTTGATATGAGCATTGCATCAGACGATGCTGGGTAAAGAGATTGTEST: gi|5566772|gb|AI881638.1|AI881638
genomic: AGCACTACCCTGATGGACGGCCGGACCATCAATGTTATTGATACACCA-Ggtaagacttc ... cttcctatagGGTTATTTGATATGAGCATTGCATCAGACGATGCTGG-TAAAGAGATTGT
EST: AAGCACTACCCTGATGGACGGCCGGACCATCAATGTTATTGATACACCAG GGTTATTTGATATGAGCATTGCATCAGACGATGCTGGTAAAGAGATTGTTAEST: gi|211324169|gb|FK968425.1|FK968425
genomic: AAGCACTACCCTGATGGACGGCCGGACCATCAATGTTATTGATACACCAGgtaagacttc ... cttcctatagGGTTATTTGATATGAGCATTGCATCAGACGATGCTGGTAAAGAGATTGTTA
EST: AAGCACTACCCTGATGGACGGCCGGACCATCAATGTTATTGATACACCAG GGTTATTTGATATGAGCATTGCATCAGACGATGCTGGTAAAGAGATTGTTAEST: gi|211324165|gb|FK968421.1|FK968421
genomic: AAGCACTACCCTGATGGACGGCCGGACCATCAATGTTATTGATACACCAGgtaagacttc ... cttcctatagGGTTATTTGATATGAGCATTGCATCAGACGATGCTGGTAAAGAGATTGTTA
EST: AAGCACTACCCTGATGGACGGCCGGACCATCAATGTTATTGATACACCAG GGTTATTTGATATGAGCATTGCATCAGACGATGCTGGTAAAGAGATTGTTAEST: gi|30160552|gb|CB924281.1|CB924281
genomic: AAGCACTACCCTGATGGACGGCCGGACCATCAATGTTATTGATACACCAGgtaagacttc ... cttcctatagGGTTATTTGATATGAGCATTGCATCAGACGATGCTGGTAAAGAGATTGTTA
EST: AAGCACTACCCTGATGGACGGCCGGACCATCAATGTTATTGATACACCAG GGTTATTTGATATGAGCATTGCATCAGACGATGCTGGTAAAGAGATTGTTAEST: gi|32863640|gb|CF003322.1|CF003322
genomic: AAGCACTACCCTGATGGACGGCCGGACCATCAATGTTATTGATACACCAGgtaagacttc ... cttcctatagGGTTATTTGATATGAGCATTGCATCAGACGATGCTGGTAAAGAGATTGTTA
EST: AAGCACTACCCTGATGGACGGCCGGACCATCAATGTTATTGATACACCAG GGTTATTTGATATGAGCATTGCATCAGACGATGCTGGTAAAGAGATTGTTAEST: gi|40287130|gb|CK327522.1|CK327522
genomic: AAGCACTACCCTGATGGACGGCCGGACCATCAATGTTATTGATACACCAGgtaagacttc ... cttcctatagGGTTATTTGATATGAGCATTGCATCAGACGATGCTGGTAAAGAGATTGTTA
EST: AAGCACTACCCTGATGGACGGCCGGACCATCAATGTTATTGATACACCAG GGTTATTTGATATGAGCATTGCATCAGACGATGCTGGTAAAGAGATTGTTAEST: gi|211324171|gb|FK968427.1|FK968427
genomic: AAGCACTACCCTGATGGACGGCCGGACCATCAATGTTATTGATACACCAGgtaagacttc ... cttcctatagGGTTATTTGATATGAGCATTGCATCAGACGATGCTGGTAAAGAGATTGTTA
EST: AAGCACTACCCTGATGGACGGCCGGACCATCAATGTTATTGATACACCAG GGTTATTTGATATGAGCATTGCATCAGACGATGCTGGTAAAGAGAYYGTYA
genomic: AAGCACTACCCTGATGGACGGCCGGACCATCAATGTTATTGATACACCAGgtaagacttc ... cttcctatagGGTTATTTGATATGAGCATTGCATCAGACGATGCTGGTAAAGAGATTGTTA
ttgtgttgttcaagtttattattttgggctagttactaacttaaacttcctatagGGTTATTTGATATGAGCATTGCATCAGACGATGCTGGTAAAGAGATTGTTAAATGTATGAACATGGCTAAAGATGGGATACATGCAGTTCTAATGGTTTT
tactaac putative branch site (score: 0)
cttcctat putative PPT
ttcaagtttattattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatattttatatttgaaaggtattcacagccaccggttattttcttgtgttgttcaagtttattattttgggctagttactaacttaaacttcctatagGGTTATTTGATATGAGCATTGCATCAGACGATGCTGGTAAAGAGATTGTTAAATGTATGAACATGGCTAAAGATGGGATACATGCAGTTCTAATGGTTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG