1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tttatttattttaaaattaattagctcattacataatttgcggatgtgcttttatggttaagctttaggcttgattcagattcacttctatttgtttcagCTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTTGTTGATAATAGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAA
species | Zea mays |
transcript | GRMZM2G135568_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGAAGTCTGTAGGGAGCAAGAACAAGAGCACTCAACACTTTGCTGTTATG CTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTTEST: gi|31349910|gb|CD434267.1|CD434267
genomic: AGAAGTCTGTAGGGAGCAAGAACAAGAGCACTCAACACTTTGCTGTTATGgtgagttatt ... tttgtttcagCTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTT
EST: ATAAGTCTGTAGGGAGCAAGAACAAGAGCACTCAACACTTTGCTGTTATG CTATTGGAGATGCTTCTGAATACTTGCGGAGAGCCTGTCCATAGGCAGGTTEST: gi|89249739|gb|DY621525.1|DY621525
genomic: AGAAGTCTGTAGGGAGCAAGAACAAGAGCACTCAACACTTTGCTGTTATGgtgagttatt ... tttgtttcagCTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTT
EST: AGAAGTCTGTAGGGAGCAAGAACAAGAGCACTCAACACTTTGCTGTTATG CTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTT
genomic: AGAAGTCTGTAGGGAGCAAGAACAAGAGCACTCAACACTTTGCTGTTATGgtgagttatt ... tttgtttcagCTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTT
gtgcttttatggttaagctttaggcttgattcagattcacttctatttgtttcagCTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTTGTTGATAATAGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAA
gcttgat putative branch site (score: 5)
cttctatttgtttc putative PPT
tatttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttatttattttaaaattaattagctcattacataatttgcggatgtgcttttatggttaagctttaggcttgattcagattcacttctatttgtttcagCTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTTGTTGATAATAGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA