1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...attagaacatatgagaacttcatttatggtccaaaatttcctttgttaactgccttttcatgtttcaaatatttatggggcgttttcttcactttttcagATGAAACTTCTGGCACAACTGTGACATTTGTGATAATAGACGAGTGGGTTGTGACTGTAGCATCTGTCGGTGATTCACGTTGCATACTAGAATCTGCCGA
species | Zea mays |
transcript | GRMZM2G135444_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGCGCTTGTTGCAGCGTTCGTCAAGACTGATAAAGATTTTCAGGCAGTGG ATGAAACTTCTGGCACAACTGTGACATTTGTGATAATAGACGAGTGGGTTGEST: gi|149095947|gb|EE181613.2|EE181613
genomic: TGCGCTTGTTGCAGCGTTCGTCAAGACTGATAAAGATTTTCAGGCAGTGGgtaagtaagt ... actttttcagATGAAACTTCTGGCACAACTGTGACATTTGTGATAATAGACGAGTGGGTTG
EST: TGCGCTTGTTGCAGCGTTCGTCAAGACTGATAAAGATTTTCAGGCAGTGG ATGAAACTTCTGGCACAACTGTGACATTTGTGATAATAGACGAGTGGGTTGEST: gi|148940139|gb|EC884892.2|EC884892
genomic: TGCGCTTGTTGCAGCGTTCGTCAAGACTGATAAAGATTTTCAGGCAGTGGgtaagtaagt ... actttttcagATGAAACTTCTGGCACAACTGTGACATTTGTGATAATAGACGAGTGGGTTG
EST: TGCGCTTGTTGCAGCGTTCGTCAAGACTGATAAAGATTTTCAGGCAGTGG ATGAAACTTCTGGCACAACTGTGACATTTGTGATAATAGACGAGTGGGTTGEST: gi|149101338|gb|EE187455.2|EE187455
genomic: TGCGCTTGTTGCAGCGTTCGTCAAGACTGATAAAGATTTTCAGGCAGTGGgtaagtaagt ... actttttcagATGAAACTTCTGGCACAACTGTGACATTTGTGATAATAGACGAGTGGGTTG
EST: TGCGCTTGTTGCAGCGTTCGTCAAGACTGATAAAGATTTTCAGGCAGTGG ATGAAACTTCTGGCACAACTGTGACATTTGTGATAATAGACGAGTGGGTTGEST: gi|149096893|gb|EE182691.2|EE182691
genomic: TGCGCTTGTTGCAGCGTTCGTCAAGACTGATAAAGATTTTCAGGCAGTGGgtaagtaagt ... actttttcagATGAAACTTCTGGCACAACTGTGACATTTGTGATAATAGACGAGTGGGTTG
EST: TGCGCTTGTTGCAGCGTTCGTCAAGACTGATAAAGATTTTCAGGCAGTGG ATGAAACTTCTGGCACAACTGTGACATTTGTGATAATAGACGAGTGGGTTGEST: gi|211393741|gb|FL095552.1|FL095552
genomic: TGCGCTTGTTGCAGCGTTCGTCAAGACTGATAAAGATTTTCAGGCAGTGGgtaagtaagt ... actttttcagATGAAACTTCTGGCACAACTGTGACATTTGTGATAATAGACGAGTGGGTTG
EST: TGCGCTTGTTGCAGCGTTCGTCAAGACTGATAAAGATTTTYAGGCAGTGG ATGAAACTTCTGGCACAACTGTGACATTTGTGATAATAGACGAEST: gi|211391125|gb|FL095548.1|FL095548
genomic: TGCGCTTGTTGCAGCGTTCGTCAAGACTGATAAAGATTTTCAGGCAGTGGgtaagtaagt ... actttttcagATGAAACTTCTGGCACAACTGTGACATTTGTGATAATAGACGA
EST: TGCGCTTGTTGCAGCGTTCGTCAAGACTGATAAAGATTTTCAGGCAGTGG ATGAAACTTCTGGCACAACTGTGACATTTGTGATAATAGACGAGTGGGTTGEST: gi|211393739|gb|FL095550.1|FL095550
genomic: TGCGCTTGTTGCAGCGTTCGTCAAGACTGATAAAGATTTTCAGGCAGTGGgtaagtaagt ... actttttcagATGAAACTTCTGGCACAACTGTGACATTTGTGATAATAGACGAGTGGGTTG
EST: TGCGCTTGTTGCAGCGTTCGTCAAGACTGATAAAGATTTTCAGGCAGTGG ATGAAACTTCTGGCACAACTGTGACATTTGTGATAATAGACGAGTGGEST: gi|149083526|gb|EE172858.2|EE172858
genomic: TGCGCTTGTTGCAGCGTTCGTCAAGACTGATAAAGATTTTCAGGCAGTGGgtaagtaagt ... actttttcagATGAAACTTCTGGCACAACTGTGACATTTGTGATAATAGACGAGTGG
EST: TGCGCTTGTTGCAGCGTTCGTCAAGACTGATAAAGATTTTCAGGCAGTGG ATGAAACTTCTGGCACAACTGTGACATTTGTGATAATAGACGAGTGGGTTGEST: gi|211391126|gb|FL095549.1|FL095549
genomic: TGCGCTTGTTGCAGCGTTCGTCAAGACTGATAAAGATTTTCAGGCAGTGGgtaagtaagt ... actttttcagATGAAACTTCTGGCACAACTGTGACATTTGTGATAATAGACGAGTGGGTTG
EST: TGCGCTTGTTGCAGCGTTCGTCAAGACTGATAAAGATTTTCAGGCAGTGG ATTGAAACTTCTGGCACAACTGTGACATTTGTGAEST: gi|211393742|gb|FL095553.1|FL095553
genomic: TGCGCTTGTTGCAGCGTTCGTCAAGACTGATAAAGATTTTCAGGCAGTGGgtaagtaagt ... actttttcagAT-GAAACTTCTGGCACAACTGTGACATTTGTGA
EST: TGCGCTTGTTGCAGCGTTCGTCAAGACTGATAAAGATTTTCAGGCAGTGG ATGAAACTTCTGGCACAACTGTGACATTTGTGATAATAGACGAGTGGGTTG
genomic: TGCGCTTGTTGCAGCGTTCGTCAAGACTGATAAAGATTTTCAGGCAGTGGgtaagtaagt ... actttttcagATGAAACTTCTGGCACAACTGTGACATTTGTGATAATAGACGAGTGGGTTG
ttaactgccttttcatgtttcaaatatttatggggcgttttcttcactttttcagATGAAACTTCTGGCACAACTGTGACATTTGTGATAATAGACGAGTGGGTTGTGACTGTAGCATCTGTCGGTGATTCACGTTGCATACTAGAATCTGCCGA
tgttaac putative branch site (score: 161)
cgttttcttcactttt putative PPT
ttttcatgtttcaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attagaacatatgagaacttcatttatggtccaaaatttcctttgttaactgccttttcatgtttcaaatatttatggggcgttttcttcactttttcagATGAAACTTCTGGCACAACTGTGACATTTGTGATAATAGACGAGTGGGTTGTGACTGTAGCATCTGTCGGTGATTCACGTTGCATACTAGAATCTGCCGA
- - gaacata
- - - - - - - - - ttcattt