Sequence
atgc intronic sequence ATGC exonic sequencegtaacactcggaaccttccttctctcgtctgacagcccgagtccttcctgacatggaccgacgccgccgccgccgcaataaattccacacattttcccatccaattccagCGTCGAGGTGATCAACATCTTCACGAAACACGGGGTCGTCAAAGTCCTCGGCACAGCCGTGTGCGTCTCTGGCGCCGTCCTGATGGTCTTCTACCGAGGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G134930_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os06g49500.3 (Oryza sativa), 3'ss of exon 2
gtaacactcggaaccttccttctctcgtctgacagcccgagtccttcctgacatggaccgacgccgccgccgccgcaataaattccacacattttcccatccaattccagCGTCGAGGTGATCAACATCTTCACGAAACACGGGGTCGTCAAAGTCCTCGGCACAGCCGTGTGCGTCTCTGGCGCCGTCCTGATGGTCTTCTACCGAGGC
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---------gtaaaattggttcatgatttggaaaatt--atctactcctgatgttg--cattggcttcaaatttcaactgaattgagtgaaattacgcgt---gttgcagTGTTGAGGTGATCAATATCTTCACCAAGGACGGCATCGTCAAGGTTCTTGGCACGGCTGTGTGCGTCTCCGGAGCCGTGCTGATGGTGTTCTATAGAGGTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18383709|gb|BM416909.1|BM416909EST: TTCCAGCCGGCGATACCGGTGTTCACGTTCCTCCTGGCCGCAATCGTCGG CGTCGAGGTGATCAACATCTTCNCGAAACATGGGGTCGTCAAAGTCCTCGG
genomic: TTCCAGCCGGCCATACCGGTGTTCACGTTCCTCCTGGCCGCAATCGTCGGgtaacactcg ... ccaattccagCGTCGAGGTGATCAACATCTTCACGAAACACGGGGTCGTCAAAGTCCTCGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaccgacgccgccgccgccgcaataaattccacacattttcccatccaattccagCGTCGAGGTGATCAACATCTTCACGAAACACGGGGTCGTCAAAGTCCTCGGCACAGCCGTGTGCGTCTCTGGCGCCGTCCTGATGGTCTTCTACCGAGGC
ttttcccatcc CT-rich tract
aataaatt TA-rich tract