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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatttttccagccatctttcacttttttttttggttcctaatctttcactgtgtaaatctacatatagtttccatcaccactaacccttgctggaggaactaatgaaacggctttctcctcctaccttgcctgccgcagGATCTTCGGGAACCAGCTCCTCTTCCTCCTGGGCCTCGGCTTCACCAACGCCTCCTACGCCGCGGCGTTCCAGCCGGCCATACCGGTGTTCACGTTCCTC

Basic information

species Zea mays
transcript GRMZM2G134930_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G134930_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os06g49500.2 (Oryza sativa), 3'ss of exon 1
gtgatttttccagccatctttcacttttttttttggttcctaatctttcactgtgtaaatctacatatagtttccatcaccactaacccttgctggaggaactaatgaaacggctttctcctcctaccttgcctgccgcagGATCTTCGGGAACCAGCTCCTCTTCCTCCTGGGCCTCGGCTTCACCAACGCCTCCTACGCCGCGGCGTTCCAGCCGGCCATACCGGTGTTCACGTTCCTC
                                                                     || | ||||    |   | |||  |           |         || ||   | | ||   || |  |||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||| || |||||||| ||||||||||||||||| ||||||
---------------------------------------------------------------------gtattcatcgattcctcctcttcttcttcttctccttctgctcatcttatcgatcgatctcttcttctccagGATCTTCGGGAACCAGCTCCTGTTCCTGCTGGGCCTCAGCTTCACCAACGCCTCCTACGCCGCAGCCTTCCAGCCAGCCATACCGGTGTTCACATTCCTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148963460|gb|EE014479.2|EE014479
EST:     CCGGTGACTCCTCGCCTCCTCGCGTCCTTCGCTCTCCTCGGATTCCCTGG                         GATCTTTCGG-AACCAGCTCCCTCTT
genomic: C-GGTGACTCCTCGCCTCCTCGCGTCCTTCGCTCTCCTCGGATTCACTGGgtgatttttc ... cctgccgcagGATCTT-CGGGAACCAGCTCC-TCTT
EST: gi|71434594|gb|DR815644.1|DR815644
EST:     CGGTGACTCCCTCGCCTCCTCGCGTCCTTCGCTCTCCTCGGATTCACTGG                         GATCTTCGGGAACCCGGCTCCTCTTCCTCCTGGGGCCTCGG
genomic: CGGTGACTCC-TCGCCTCCTCGCGTCCTTCGCTCTCCTCGGATTCACTGGgtgatttttc ... cctgccgcagGATCTTCGGGAACCAG-CTCCTCTTCCTCCTGGG-CCTCGG
EST: gi|18384215|gb|BM417414.1|BM417414
EST:     CCGGTGACGCCTCGCCTCCTCGCGTCCTTCGCTCTCCTCGGATTCACTGG                         GATCTTCGGGAACCAGCTCCTCTTCCTCCTGGGCCTCGGC
genomic: CCGGTGACTCCTCGCCTCCTCGCGTCCTTCGCTCTCCTCGGATTCACTGGgtgatttttc ... cctgccgcagGATCTTCGGGAACCAGCTCCTCTTCCTCCTGGGCCTCGGC
EST: gi|94476183|gb|EB705141.1|EB705141
EST:     CCGGTGACTCCTCGCCTCCTCGCGTCCTTCGCTCTCCTCGGATTCACTGG                         GATCTTCGGGAACCAGCTCCTCTTCCTCCTGGGCCTCGGCTTCACCAACGC
genomic: CCGGTGACTCCTCGCCTCCTCGCGTCCTTCGCTCTCCTCGGATTCACTGGgtgatttttc ... cctgccgcagGATCTTCGGGAACCAGCTCCTCTTCCTCCTGGGCCTCGGCTTCACCAACGC
EST: gi|88758283|gb|DY542424.1|DY542424
EST:     CCGGTGACTCCTCGCCTCCTCGCGTCCTTCGCTCTCCTCGGATTCACTGG                         GATCTTCGGGAACCAGCTCCTCTTCCTCCTGGGCCTCGGCTTCACCAACGC
genomic: CCGGTGACTCCTCGCCTCCTCGCGTCCTTCGCTCTCCTCGGATTCACTGGgtgatttttc ... cctgccgcagGATCTTCGGGAACCAGCTCCTCTTCCTCCTGGGCCTCGGCTTCACCAACGC
EST: gi|148951696|gb|EC897448.2|EC897448
EST:     CCGGTGACTCCTCGCCTCCTCGCGTCCTTCGCTCTCCTCGGATTCACTGG                         GATCTTCGGGAACCAGCTCCTCTTCCTCCTGGGCCTCGGCTTCACCAACGC
genomic: CCGGTGACTCCTCGCCTCCTCGCGTCCTTCGCTCTCCTCGGATTCACTGGgtgatttttc ... cctgccgcagGATCTTCGGGAACCAGCTCCTCTTCCTCCTGGGCCTCGGCTTCACCAACGC
EST: gi|149058751|gb|EE156769.2|EE156769
EST:     CCGGTGACTCCTCGCCTCCTCGCGTCCTTCGCTCTCCTCGGATTCACTGG                         GATCTTCGGGAACCAGCTCCTCTTCCTCCTGGGCCTCGGCTTCACCAACGC
genomic: CCGGTGACTCCTCGCCTCCTCGCGTCCTTCGCTCTCCTCGGATTCACTGGgtgatttttc ... cctgccgcagGATCTTCGGGAACCAGCTCCTCTTCCTCCTGGGCCTCGGCTTCACCAACGC
EST: gi|78106564|gb|DV524982.1|DV524982
EST:     CCGGTGACTCCTCGCCTCCTCGCGTCCTTCGCTCTCCTCGGATTCACTGG                         GATCTTCGGGAACCAGCTCCTCTTCCTCCTGGGCCTCGGCTTCACCAACGC
genomic: CCGGTGACTCCTCGCCTCCTCGCGTCCTTCGCTCTCCTCGGATTCACTGGgtgatttttc ... cctgccgcagGATCTTCGGGAACCAGCTCCTCTTCCTCCTGGGCCTCGGCTTCACCAACGC
EST: gi|89762148|gb|DY689879.1|DY689879
EST:     CCGGTGACTCCTCGCCTCCTCGCGTCCTTCGCTCTCCTCGGATTCACTGG                         GATCTTCGGGAACCAGCTCCTCTTCCTCCTGGGCCTCGGCTTCACCAACGC
genomic: CCGGTGACTCCTCGCCTCCTCGCGTCCTTCGCTCTCCTCGGATTCACTGGgtgatttttc ... cctgccgcagGATCTTCGGGAACCAGCTCCTCTTCCTCCTGGGCCTCGGCTTCACCAACGC
EST: gi|148971932|gb|EE022716.2|EE022716
EST:     CCGGTGACTCCTCGCCTCCTCGCGTCCTTCGCTCTCCTCGGATTCACTGG                         GATCTTCGGGAACCAGCTCCTCTTCCTCCTGGGCCTCGGCTTCACCAACGC
genomic: CCGGTGACTCCTCGCCTCCTCGCGTCCTTCGCTCTCCTCGGATTCACTGGgtgatttttc ... cctgccgcagGATCTTCGGGAACCAGCTCCTCTTCCTCCTGGGCCTCGGCTTCACCAACGC
EST: gi|148966599|gb|EE017634.2|EE017634
EST:     CCGGTGACTCCTCGCCTCCTCGCGTCCTTCGCTCTCCTCGGATTCACTGG                         GATCTTCGGGAACCAGCTCCTCTTCCTCCTGGGCCTCGGCTTCACCAACGC
genomic: CCGGTGACTCCTCGCCTCCTCGCGTCCTTCGCTCTCCTCGGATTCACTGGgtgatttttc ... cctgccgcagGATCTTCGGGAACCAGCTCCTCTTCCTCCTGGGCCTCGGCTTCACCAACGC
EST: gi|78114582|gb|DV532970.1|DV532970
EST:     CCGGTGACTCCTCGCCTCCTCGCGTCCTTCGCTCTCCTCGGATTCACTGG                         GATCTTCGGGAACCAGCTCCTCTTCCTCCTGGGCCTCGGCTTCACCAACGC
genomic: CCGGTGACTCCTCGCCTCCTCGCGTCCTTCGCTCTCCTCGGATTCACTGGgtgatttttc ... cctgccgcagGATCTTCGGGAACCAGCTCCTCTTCCTCCTGGGCCTCGGCTTCACCAACGC
EST: gi|87153844|gb|DY398633.1|DY398633
EST:     CCGGTGACGCCTCGCCTCCTCGCGTCCTTCGCTCTCCTCGGATTCACTGG                         GATCTTCGGGAACCAGCTCCTCTTCCTCCTGGGCCTCGGCTTCACCAACGC
genomic: CCGGTGACTCCTCGCCTCCTCGCGTCCTTCGCTCTCCTCGGATTCACTGGgtgatttttc ... cctgccgcagGATCTTCGGGAACCAGCTCCTCTTCCTCCTGGGCCTCGGCTTCACCAACGC
EST: gi|149101866|gb|EE287429.2|EE287429
EST:     CCGGTGACTCCTCGCCTCCTCGCGTCCTTCGCTCTCCTCGGATTCACTGG                         GATCTTCGGGAACCAGCTCCTCTTCCTCCTGGGCCTCGGCTTCACCAACGC
genomic: CCGGTGACTCCTCGCCTCCTCGCGTCCTTCGCTCTCCTCGGATTCACTGGgtgatttttc ... cctgccgcagGATCTTCGGGAACCAGCTCCTCTTCCTCCTGGGCCTCGGCTTCACCAACGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cccttgctggaggaactaatgaaacggctttctcctcctaccttgcctgccgcagGATCTTCGGGAACCAGCTCCTCTTCCTCCTGGGCCTCGGCTTCACCAACGCCTCCTACGCCGCGGCGTTCCAGCCGGCCATACCGGTGTTCACGTTCCTC
             aactaat  putative branch site (score: 2)
                           ctttctcctcctacct  putative PPT
                taatgaaa  TA-rich tract