1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaggtgccttcatctctaacttattttagatttctctaccagccttattttcaacgttctgtgcacctattaacagatataatccaatgtgtatgatgcagATGGGGAGTTTAAAGCATCAGCCATTGCTGGTTTTGTGTCTGCTAACAAGCTTCCTTTGGTGACCACACTAACTCAAGAAACTTCCCCTTCTATTTTTGG
species | Zea mays |
transcript | GRMZM2G134889_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCCATCCGTAGTGCTGCTGAAGAAAGAGGAGGAGAAGTTGACCTTCTATG ATGGGGAGTTTAAAGCATCAGCCATTGCTGGTTTTGTGTCTGCTAACAAGCEST: gi|19057888|gb|BM736555.1|BM736555
genomic: TCCATCCGTAGTGCTGCTGAAGAAAGAGGAGGAGAAGTTGACCTTCTATGgtaggtgcct ... tatgatgcagATGGGGAGTTTAAAGCATCAGCCATTGCTGGTTTTGTGTCTGCTAACAAGC
EST: TCCATCCGTAGTGCTGCTGAAGAAAGAGGAGGAGAAGTTGACCTTCTATG ATGGGGAGTTTAAAGCATCAGCCATTGCTGGTTTTGTGTCTGCTAACAAGCEST: gi|211496710|gb|FL402045.1|FL402045
genomic: TCCATCCGTAGTGCTGCTGAAGAAAGAGGAGGAGAAGTTGACCTTCTATGgtaggtgcct ... tatgatgcagATGGGGAGTTTAAAGCATCAGCCATTGCTGGTTTTGTGTCTGCTAACAAGC
EST: CCATCCGTAGTGCTGCTGAAGAAAGAGGAGGAGAAGTTGACCTTCTATG ATGGGGAGTTTAAAGCATCAGCCATTRCTGGTTTTGTGTCTGCTAACAAGCEST: gi|19855080|gb|BQ060132.1|BQ060132
genomic: CCATCCGTAGTGCTGCTGAAGAAAGAGGAGGAGAAGTTGACCTTCTATGgtaggtgcct ... tatgatgcagATGGGGAGTTTAAAGCATCAGCCATTGCTGGTTTTGTGTCTGCTAACAAGC
EST: TCCATCCGTAGTGCTGCTGAAGAAAGAGGAGGAGAAGTTGACCTTCTATG ATGGGGAGTTTAAAGCATCAGCCATTGCTGGTTTTGTGTCTGCTAACAAGC
genomic: TCCATCCGTAGTGCTGCTGAAGAAAGAGGAGGAGAAGTTGACCTTCTATGgtaggtgcct ... tatgatgcagATGGGGAGTTTAAAGCATCAGCCATTGCTGGTTTTGTGTCTGCTAACAAGC
attttcaacgttctgtgcacctattaacagatataatccaatgtgtatgatgcagATGGGGAGTTTAAAGCATCAGCCATTGCTGGTTTTGTGTCTGCTAACAAGCTTCCTTTGGTGACCACACTAACTCAAGAAACTTCCCCTTCTATTTTTGG
tattaac putative branch site (score: 281)
tattaacagatataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggtgccttcatctctaacttattttagatttctctaccagccttattttcaacgttctgtgcacctattaacagatataatccaatgtgtatgatgcagATGGGGAGTTTAAAGCATCAGCCATTGCTGGTTTTGTGTCTGCTAACAAGCTTCCTTTGGTGACCACACTAACTCAAGAAACTTCCCCTTCTATTTTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA