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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggttgctcttgctccgccgcctcgttatctcactctccgtatctatctataagttgcatctgagtgaattcccctcggcgtgggacaataaacctccttctcagGCAGCCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCAAGAACGTTAACTTCGCCTTTCGCACCACTTGCAACATGCGCAACTGCAACCAGTCCAGGCC

Basic information

species Zea mays
transcript GRMZM2G134770_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G134770_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os08g41010.3 (Oryza sativa), 3'ss of exon 2
gtaggttgctcttgctccgccgcctcgttatctcactctccgtatctatctataagttgcatctgagtgaattcccctcggcgtgggacaataaacctccttctcagGCAGCCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCAAGAACGTTAACTTCGCCTTTCGCACCACTTGCAACATGCGCAACTGCAACCAGTCCAGGCC
|||||| ||| | ||  || ||  |     |    || ||| |  || | ||  || |||||||||| | | |  | |     ||| |      ||  |  || ||||  | ||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||| |||||||||||||| |||||||| ||||||||
gtaggtcgct-tcgccgcggcgattaacc-tgcggctttcctttactgttta--agctgcatctgaggggaatttcatt--tttggtatggatgacgac--tcacagGTGGGCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCCAGAACGTCAACTTCGCCTTCCGCACCACCTGCAACATGCGCAATTGCAACCAATCCAGGCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211157322|gb|FK993534.1|FK993534
EST:     GTCGACAGCCGCAGCCAGTCCGCCGGGAAGCGCGCGCGCACCGACG                         GCAGCCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCAAGAACGTTAACT
genomic: GTCGACAGCCGCAGCCAGTCCGCCGGGAAGCGCGCGCGCACCGACGgtaggttgct ... tccttctcagGCAGCCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCAAGAACGTTAACT
EST: gi|94480167|gb|EB709125.1|EB709125
EST:     GTCGACAGCCGCAGCCAGTCCGCCGGGAAGCGCGCGCGCACCGACG                         GCAGCCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCAAGAACGTTAACT
genomic: GTCGACAGCCGCAGCCAGTCCGCCGGGAAGCGCGCGCGCACCGACGgtaggttgct ... tccttctcagGCAGCCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCAAGAACGTTAACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taagttgcatctgagtgaattcccctcggcgtgggacaataaacctccttctcagGCAGCCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCAAGAACGTTAACTTCGCCTTTCGCACCACTTGCAACATGCGCAACTGCAACCAGTCCAGGCC
                                           cctccttctc  CT-rich tract
                                   acaataaa  TA-rich tract