Sequence
atgc intronic sequence ATGC exonic sequence...agggtagtgatttaattagaatagtcaacaatatatgtcgataatattatcacctgactagcccatatgaacacatactgatgccgtttcacatctgcagAAATCTGAACATATGATGTCTAGGCCAACCCGCAAGACATCTTGATGTGGCTGGTGAGGAGGAGAAACATGATCGTAGTGGTTGGTATCGGGCTCAGCAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G134747_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os10g33270.1 (Oryza sativa), 3'ss of exon 3
---agggtagtgatttaattagaat------agtcaacaatatatgtcgataatattatcacctgactagcccatatgaacacatactgatgccgtttcacatctgcagAAATCTGAACATATGATGTCTAGGCCAACCCGCAAGACATCTTGATGTGGCTGGTGAGGAGGAGAAACATGATCGTAGTGGTTGGTATCGGGCTCAGCAA---
| ||| | |||||| | | | | | | | | || | | | |||| ||| | | | |||| | | ||||| || |||||| |||||| |||||||||||||||| |||||||||||||||||| ||||||||| | || ||| ||||| ||| || | || | | | |
acccattctatctttttactagaattcttccatcttattacctctcttgctgatctga--atttgacaagcagttctaagcacagaat-------tttcatatttgcagAGATCTGATCATATGATGTCTAGGCTGACCCGCAAGACATCTTGAGATGGCTGGTGTTGTGGGAAAA-ATGAT-GTATCATCTGCT-TCTGCTTGTGGATTGAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|113571359|gb|DW741030.1|DW741030EST: GGGAAGTATCTACCTTACACTGAACAG AAATCTGAACATATGATGTCTAGGCCAACCCGCAAGACATCTTGATGTGGC
genomic: GGGAAGTATCTACCTTACACTGAACAGgtccgtgtct ... acatctgcagAAATCTGAACATATGATGTCTAGGCCAACCCGCAAGACATCTTGATGTGGC
EST:
gi|211009982|gb|FL448376.1|FL448376EST: ACACTGAACAG AAATCTGAACATATGATGTCTAGGCCAACCCGCAAGACATCTTGATGTGGC
genomic: ACACTGAACAGgtccgtgtct ... acatctgcagAAATCTGAACATATGATGTCTAGGCCAACCCGCAAGACATCTTGATGTGGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attatcacctgactagcccatatgaacacatactgatgccgtttcacatctgcagAAATCTGAACATATGATGTCTAGGCCAACCCGCAAGACATCTTGATGTGGCTGGTGAGGAGGAGAAACATGATCGTAGTGGTTGGTATCGGGCTCAGCAA
tactgat putative branch site (score: 2)
atatgaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agggtagtgatttaattagaatagtcaacaatatatgtcgataatattatcacctgactagcccatatgaacacatactgatgccgtttcacatctgcagAAATCTGAACATATGATGTCTAGGCCAACCCGCAAGACATCTTGATGTGGCTGGTGAGGAGGAGAAACATGATCGTAGTGGTTGGTATCGGGCTCAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA