1 5' 3' | 2 5' 3' | 3 5' 3' |
...gaaatcctgtccatgaagctccattgaatatttttctaaaaaaaattgaatcgtatttgctaaaatggtgttatcatattaccattgcttcttattgcagCATGTCAGCCATAGACTTCTATTGTTCAGTTGACAAGGTTGAAGGGGCCGACGGAAAAGATCGTGTGGTGGTCACATTTGATGGGAAGTATCTACCTTAC
species | Zea mays |
transcript | GRMZM2G134747_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTTGGAGAGAGCATCAAGGAAATCATCAATGAGGAGTTTGGTGATGGAAT CATGTCAGCCATAGACTTCTATTGTTCAGTTGACAAGGTTGAAGGGGCCGAEST: gi|211047251|gb|FL125325.1|FL125325
genomic: TTTGGAGAGAGCATCAAGGAAATCATCAATGAGGAGTTTGGTGATGGAATgtaagagata ... cttattgcagCATGTCAGCCATAGACTTCTATTGTTCAGTTGACAAGGTTGAAGGGGCCGA
EST: TTTGGAGAGAGCATCAAGGAAATCATCAATGAGGAGTTTGGTGATGGAAT CATGTCAGCCATAGACTTCTATTGEST: gi|211044297|gb|FL125320.1|FL125320
genomic: TTTGGAGAGAGCATCAAGGAAATCATCAATGAGGAGTTTGGTGATGGAATgtaagagata ... cttattgcagCATGTCAGCCATAGACTTCTATTG
EST: TTTGGAGAGAGCATCAAGGAAATCATCAATGAGGAGTTTGGTGATGGAAT CATGTCAGCCATAGACTTCTATTGEST: gi|60400889|gb|DN233696.1|DN233696
genomic: TTTGGAGAGAGCATCAAGGAAATCATCAATGAGGAGTTTGGTGATGGAATgtaagagata ... cttattgcagCATGTCAGCCATAGACTTCTATTG
EST: TTTGGAGAGAGCATCAAGGAAATCATCAATGAGGAGTTTGGTGATGGAAT CATGTCAGCCATAGACTTCTATTGTTCAGTTGACAAGGTTGAAGGGGCCGAEST: gi|211469684|gb|FL432027.1|FL432027
genomic: TTTGGAGAGAGCATCAAGGAAATCATCAATGAGGAGTTTGGTGATGGAATgtaagagata ... cttattgcagCATGTCAGCCATAGACTTCTATTGTTCAGTTGACAAGGTTGAAGGGGCCGA
EST: TTTGGAGAGAGCATCAAGGAAATCATCAATGAGGAGTTTGGTGATGGAAT CATGTCAGCCATAGACTTCTATTGTTCAGTTGACAAGGTTGAAGGGGCCGAEST: gi|211044290|gb|FL125313.1|FL125313
genomic: TTTGGAGAGAGCATCAAGGAAATCATCAATGAGGAGTTTGGTGATGGAATgtaagagata ... cttattgcagCATGTCAGCCATAGACTTCTATTGTTCAGTTGACAAGGTTGAAGGGGCCGA
EST: TTTGGAGAGAGCATCAAGGAAATCATCAATGAGGAGTTTGGTGATGGAAT CATGTCAGCCATAGACTTCTATTGTTCAGTTGEST: gi|31441069|gb|CD510500.1|CD510500
genomic: TTTGGAGAGAGCATCAAGGAAATCATCAATGAGGAGTTTGGTGATGGAATgtaagagata ... cttattgcagCATGTCAGCCATAGACTTCTATTGTTCAGTTG
EST: TTTGGAGAGAGCATCAAGGAAATCATCAATGAGGAGTTTGGTGATGGAAT CATGTCAGCCATAGACTTCTATTGTTCAGTTGACAAGGTTGAAGGGGCCGAEST: gi|22542458|gb|BU092896.1|BU092896
genomic: TTTGGAGAGAGCATCAAGGAAATCATCAATGAGGAGTTTGGTGATGGAATgtaagagata ... cttattgcagCATGTCAGCCATAGACTTCTATTGTTCAGTTGACAAGGTTGAAGGGGCCGA
EST: TTTGGAGAGAGCATCAAGGAAATCATCAATGAGGAGTTTGGTGATGGAAT CATGTCAGCCATAGACTTCTATTGTTCAGTTGACAAGGTTGAAGGGGCCGAEST: gi|211191597|gb|FL255435.1|FL255435
genomic: TTTGGAGAGAGCATCAAGGAAATCATCAATGAGGAGTTTGGTGATGGAATgtaagagata ... cttattgcagCATGTCAGCCATAGACTTCTATTGTTCAGTTGACAAGGTTGAAGGGGCCGA
EST: TTTGGAGAGAGCATCAAGGAAATCATCAATGAGGAGTTTGGTGATGGAAT CATGTCAGCCATAGACTTCTATTGTTCAGTTGACAAGGTTGAAGGGGCCGAEST: gi|78544325|gb|DV621823.1|DV621823
genomic: TTTGGAGAGAGCATCAAGGAAATCATCAATGAGGAGTTTGGTGATGGAATgtaagagata ... cttattgcagCATGTCAGCCATAGACTTCTATTGTTCAGTTGACAAGGTTGAAGGGGCCGA
EST: TTTGGAGAGAGCATCAAGGAAATCATCAATGAGGAGTTTGGTGATGGAAT CATGTCAGCCATAGACTTCTATTGTTCAGTTGACAAGGTTGAAGGGGCCGAEST: gi|211047250|gb|FL125324.1|FL125324
genomic: TTTGGAGAGAGCATCAAGGAAATCATCAATGAGGAGTTTGGTGATGGAATgtaagagata ... cttattgcagCATGTCAGCCATAGACTTCTATTGTTCAGTTGACAAGGTTGAAGGGGCCGA
EST: TTTGGAGAGAGCATCAAGGAAATCATCAATGAGGAGTTTGGTGATGGAAT CATGTCAGCCATAGACTEST: gi|26457359|gb|CA828942.1|CA828942
genomic: TTTGGAGAGAGCATCAAGGAAATCATCAATGAGGAGTTTGGTGATGGAATgtaagagata ... cttattgcagCATGTCAGCCATAGACT
EST: TTTGGAGAGAGCATCAAGGAAATCATCAATGAGGAGTTTGGTGATGGAAT CATGTCAGCCATAGACTTCTATTGTTCAGTTGACAAGGTTGAAGGGGCCGAEST: gi|31405717|gb|CD484449.1|CD484449
genomic: TTTGGAGAGAGCATCAAGGAAATCATCAATGAGGAGTTTGGTGATGGAATgtaagagata ... cttattgcagCATGTCAGCCATAGACTTCTATTGTTCAGTTGACAAGGTTGAAGGGGCCGA
EST: TTTGGAGAGAGCATCAAGGAAATCATCAATGAGGAGTTTGGTGATGGAAT CATGTCAGCCATAGACTTCTATTGTTCAGTTGACAAGGTTGAAGGGGCCGAEST: gi|60399029|gb|DN231845.1|DN231845
genomic: TTTGGAGAGAGCATCAAGGAAATCATCAATGAGGAGTTTGGTGATGGAATgtaagagata ... cttattgcagCATGTCAGCCATAGACTTCTATTGTTCAGTTGACAAGGTTGAAGGGGCCGA
EST: TTTGGAGAGAGCATCAAGGAAATCATCAATGAGGAGTTTGGTGATGGAAT CATGTCAGCCATAGACTTCTATTGTTCAGTTGACAAGGTTGAAGGGGCCGAEST: gi|211044293|gb|FL125316.1|FL125316
genomic: TTTGGAGAGAGCATCAAGGAAATCATCAATGAGGAGTTTGGTGATGGAATgtaagagata ... cttattgcagCATGTCAGCCATAGACTTCTATTGTTCAGTTGACAAGGTTGAAGGGGCCGA
EST: TTTGGAGAGAGCATCAAGGAAATCATCAATGAGGAGTTTGGTGATGGAAT CATGTCAGCCATAGACTTCTATTGTTCAGTTGACAAGGTTGAAGGGGCCGAEST: gi|12046752|gb|BF728891.1|BF728891
genomic: TTTGGAGAGAGCATCAAGGAAATCATCAATGAGGAGTTTGGTGATGGAATgtaagagata ... cttattgcagCATGTCAGCCATAGACTTCTATTGTTCAGTTGACAAGGTTGAAGGGGCCGA
EST: TTTGGAGAGAGCATCAAGGAAATCATCAATGAGGAGTTTGGTGATGGAAT CATGTCAGCCATAGACTTCTATTGTTCAGTTGACAAGGTTGAAGGGGCCGAEST: gi|31611770|gb|CD568392.1|CD568392
genomic: TTTGGAGAGAGCATCAAGGAAATCATCAATGAGGAGTTTGGTGATGGAATgtaagagata ... cttattgcagCATGTCAGCCATAGACTTCTATTGTTCAGTTGACAAGGTTGAAGGGGCCGA
EST: TTTGGAGAGAGCATCAAGGAAATCATCAATGAGGAGTTTGGTGATGGAAT CATGTCAGCCATAGACTTCTATTGTTCAGTTGACAAGGTTGAAGGGGCCGAEST: gi|30032230|gb|CB834081.1|CB834081
genomic: TTTGGAGAGAGCATCAAGGAAATCATCAATGAGGAGTTTGGTGATGGAATgtaagagata ... cttattgcagCATGTCAGCCATAGACTTCTATTGTTCAGTTGACAAGGTTGAAGGGGCCGA
EST: TTTGGAGAGAGCATCAAGGAAATCATCAATGAGGAGTTTGGTGATGGAAT CATGTCAGCCATAGACTTCTATTGTTCAGTTGACAAGGTTGAAGGGGCCGAEST: gi|211044299|gb|FL125322.1|FL125322
genomic: TTTGGAGAGAGCATCAAGGAAATCATCAATGAGGAGTTTGGTGATGGAATgtaagagata ... cttattgcagCATGTCAGCCATAGACTTCTATTGTTCAGTTGACAAGGTTGAAGGGGCCGA
EST: TTTGGAGAGAGCATCAAGGAAATCATCAATGAGGAGTTTGGTGATGGAAT CATGTCAGCCATAGACTTCTATTGTTCAGTTGACAAGGTTGEST: gi|31406273|gb|CD485005.1|CD485005
genomic: TTTGGAGAGAGCATCAAGGAAATCATCAATGAGGAGTTTGGTGATGGAATgtaagagata ... cttattgcagCATGTCAGCCATAGACTTCTATTGTTCAGTTGACAAGGTTG
EST: TTTGGAGAGAGCATCAAGGAAATCATCAATGAGGAGTTTGGTGATGGAAT CATGTCAGCCATAGACTTCTATTGTTCAGTTGACAAGGTTGAAGGGGCCGAEST: gi|7844445|gb|AW787667.1|AW787667
genomic: TTTGGAGAGAGCATCAAGGAAATCATCAATGAGGAGTTTGGTGATGGAATgtaagagata ... cttattgcagCATGTCAGCCATAGACTTCTATTGTTCAGTTGACAAGGTTGAAGGGGCCGA
EST: TTTGGAGAGAGCATCAAGGAAATCATCAATGAGGAGTTTGGTGATGGAAT CATGTCAGCCATAGACTTCTATTGTTCAGTTGACAAGGTTGAAGGGGCCGAEST: gi|149011217|gb|EE042296.2|EE042296
genomic: TTTGGAGAGAGCATCAAGGAAATCATCAATGAGGAGTTTGGTGATGGAATgtaagagata ... cttattgcagCATGTCAGCCATAGACTTCTATTGTTCAGTTGACAAGGTTGAAGGGGCCGA
EST: TTTGGAGAGAGCATCAAGGAAATCATCAATGAGGAGTTTGGTGATGGAAT CATGTCAGCCATAGACTTCTATTGTTCAGTTGACAAGGTTGAAGGGGCCGAEST: gi|7844017|gb|AW787344.1|AW787344
genomic: TTTGGAGAGAGCATCAAGGAAATCATCAATGAGGAGTTTGGTGATGGAATgtaagagata ... cttattgcagCATGTCAGCCATAGACTTCTATTGTTCAGTTGACAAGGTTGAAGGGGCCGA
EST: TTTGGAGAGAGCATCAAGGAAATCATCAATGAGGAGTTTGGTGATGGAAT CATGTCAGCCATAGACTTCTATTGTTCAGTTGACAAGGTTGAAGGGGCCGA
genomic: TTTGGAGAGAGCATCAAGGAAATCATCAATGAGGAGTTTGGTGATGGAATgtaagagata ... cttattgcagCATGTCAGCCATAGACTTCTATTGTTCAGTTGACAAGGTTGAAGGGGCCGA
ttgaatcgtatttgctaaaatggtgttatcatattaccattgcttcttattgcagCATGTCAGCCATAGACTTCTATTGTTCAGTTGACAAGGTTGAAGGGGCCGACGGAAAAGATCGTGTGGTGGTCACATTTGATGGGAAGTATCTACCTTAC
tgctaaa putative branch site (score: 86)
ttgcttctt putative PPT
ttatcatatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaatcctgtccatgaagctccattgaatatttttctaaaaaaaattgaatcgtatttgctaaaatggtgttatcatattaccattgcttcttattgcagCATGTCAGCCATAGACTTCTATTGTTCAGTTGACAAGGTTGAAGGGGCCGACGGAAAAGATCGTGTGGTGGTCACATTTGATGGGAAGTATCTACCTTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - gtccatg
- - - - - - - - agctcca
- - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgctaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggtgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccattgc