1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagccttaattaatttttacccatgtcctctgattatttccatgatagcttttgtgttcattcaaacctgctttcttgtaatatagGTCATTGTTGAGAAGGCCGAGAGGAGTGACATCCCAGACATTGACAAGAAAAA
species | Zea mays |
transcript | GRMZM2G134613_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGCAAGCTGAGGCTAACCGCATCAGGGAGAAATACCCTGACAGAATCCCT GTCATTGTTGAGAAGGCCGAGAGGAGTGACATCCCAGACATTGACAAGAAAEST: gi|71306764|gb|DR789543.1|DR789543
genomic: GGCAAGCTGAGGCTAACCGCATCAGGGAGAAATACCCTGACAGAATCCCTgtaagcctta ... tgtaatatagGTCATTGTTGAGAAGGCCGAGAGGAGTGACATCCCAGACATTGACAAGAAA
EST: CCCTGACAGAATCCCT GTCATTGTTGAGAAGGCCGAGAGGAGTGACATCCCAGACATTGACAAGAAAEST: gi|71306765|gb|DR789544.1|DR789544
genomic: CCCTGACAGAATCCCTgtaagcctta ... tgtaatatagGTCATTGTTGAGAAGGCCGAGAGGAGTGACATCCCAGACATTGACAAGAAA
EST: CCCTGACAGAATCCCT GTCATTGTTGAGAAGGCCGAGAGGAGTGACATCCCAGACATTGACAAGAAAEST: gi|37386976|gb|CF630680.1|CF630680
genomic: CCCTGACAGAATCCCTgtaagcctta ... tgtaatatagGTCATTGTTGAGAAGGCCGAGAGGAGTGACATCCCAGACATTGACAAGAAA
EST: GGGAGAAATACCCTGACAGAATCCCT GTCATTGTTGAGAAGGCCGTGAGGAGTGACATCCCAGACATTGACAAGAAAEST: gi|16925527|gb|BM078595.1|BM078595
genomic: GGGAGAAATACCCTGACAGAATCCCTgtaagcctta ... tgtaatatagGTCATTGTTGAGAAGGCCGAGAGGAGTGACATCCCAGACATTGACAAGAAA
EST: GGCAAGATAAGGCTAACCGCATCAGGGAGAAATACCCTGACAGAATCCCT GTCATTGTTGAGAAGGCCGAGAGGAGTGACATCCCAGACATTGACAAGAAAEST: gi|67025573|gb|CO454322.1|CO454322
genomic: GGCAAGCTGAGGCTAACCGCATCAGGGAGAAATACCCTGACAGAATCCCTgtaagcctta ... tgtaatatagGTCATTGTTGAGAAGGCCGAGAGGAGTGACATCCCAGACATTGACAAGAAA
EST: GGCAAGCTGAGGCTAACCGCATCAGGGAGAAATACCCTGACAGAATCCCT GTCATTGTTGAGAAGGCCGAGAGGAGTGACATCCCAGACATTGACAAGAAAEST: gi|84980814|gb|DW531163.1|DW531163
genomic: GGCAAGCTGAGGCTAACCGCATCAGGGAGAAATACCCTGACAGAATCCCTgtaagcctta ... tgtaatatagGTCATTGTTGAGAAGGCCGAGAGGAGTGACATCCCAGACATTGACAAGAAA
EST: GGCAAGCTGAGGCTAACCGCATCAGGGAGAAATACCCTGACAGAATCCCT GTCATTGTTGAGAAGGCCGAGAGGAGTGACATCCCAGACATTGACAAGAAAEST: gi|5761920|gb|AI966893.1|AI966893
genomic: GGCAAGCTGAGGCTAACCGCATCAGGGAGAAATACCCTGACAGAATCCCTgtaagcctta ... tgtaatatagGTCATTGTTGAGAAGGCCGAGAGGAGTGACATCCCAGACATTGACAAGAAA
EST: GGCAAGCTGAGGCTAACCGCATCAGGGAGAAATACCCTGACAGAATCCCT GTCATTGTTGAGAAGGCCGAGAGGAGTGACATCCCAGACATTGACAAGAAAEST: gi|116828492|gb|EC857917.1|EC857917
genomic: GGCAAGCTGAGGCTAACCGCATCAGGGAGAAATACCCTGACAGAATCCCTgtaagcctta ... tgtaatatagGTCATTGTTGAGAAGGCCGAGAGGAGTGACATCCCAGACATTGACAAGAAA
EST: GGCAAGCTGAGGCTAACCGCATCAGGGAGAAGTACCCTGACAGAATCCCT GCCATTGTTGAGAAGGCCGAGAGGAGTGACATCCCAGACATTGACAAGAAAEST: gi|18168853|gb|BM338693.1|BM338693
genomic: GGCAAGCTGAGGCTAACCGCATCAGGGAGAAATACCCTGACAGAATCCCTgtaagcctta ... tgtaatatagGTCATTGTTGAGAAGGCCGAGAGGAGTGACATCCCAGACATTGACAAGAAA
EST: CATCAGGGGGAAATACCCTGACAGAATCCCT GTCATTGTTGAGAAGGCCGAGAGGAGTGACATCCCAGACATTGACAAGAAAEST: gi|37374696|gb|CF623730.1|CF623730
genomic: CATCAGGGAGAAATACCCTGACAGAATCCCTgtaagcctta ... tgtaatatagGTCATTGTTGAGAAGGCCGAGAGGAGTGACATCCCAGACATTGACAAGAAA
EST: GGCAAGCTGAGGCTAACCGCATCAGGGAGAAATACCCTGACAGAATCCCT GTCATTGTTGAGAAGGCCGAGAGGAGTGACATCCCAGACATTGACAAGAAAEST: gi|67040113|gb|CO466368.1|CO466368
genomic: GGCAAGCTGAGGCTAACCGCATCAGGGAGAAATACCCTGACAGAATCCCTgtaagcctta ... tgtaatatagGTCATTGTTGAGAAGGCCGAGAGGAGTGACATCCCAGACATTGACAAGAAA
EST: GGCAAGCTGAGGCTAACCGCATCAGGGAGAAATACCCTGACAGAATCCCT GTCATTGTTGAGAAGGCCGAGAGGAGTGACATCCCAGACATTGACAAGAAA
genomic: GGCAAGCTGAGGCTAACCGCATCAGGGAGAAATACCCTGACAGAATCCCTgtaagcctta ... tgtaatatagGTCATTGTTGAGAAGGCCGAGAGGAGTGACATCCCAGACATTGACAAGAAA
gattatttccatgatagcttttgtgttcattcaaacctgctttcttgtaatatagGTCATTGTTGAGAAGGCCGAGAGGAGTGACATCCCAGACATTGACAAGAAAAA
ctctgat putative branch site (score: 4)
cctgctttctt putative PPT
tttcttgtaatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagccttaattaatttttacccatgtcctctgattatttccatgatagcttttgtgttcattcaaacctgctttcttgtaatatagGTCATTGTTGAGAAGGCCGAGAGGAGTGACATCCCAGACATTGACAAGAAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA