1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgaagtatattaaaaaatgaggcgttatactgccagctgttgtcttgttttactccccttccatatgacatggagttttataatcagGGAGTTGAACTGGAGTTGCTCAAGCTCGAAGTTGCTGTCCAATCAATCCATGACAACCTGCTGCTACTAAAATCCAA
species | Zea mays |
transcript | GRMZM2G134497_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGCTGGCTAGTAGAGACTGGGATTCTGTTGCCAAAAAGGAAAAGATCGAG GGAGTTGAACTGGAGTTGCTCAAGCTCGAAGTTGCTGTCCAATCAATCCATEST: gi|8930003|gb|BE224841.1|BE224841
genomic: GGCTGGCTAGTAGAGACTGGGATTCTGTTGCCAAAAAGGAAAAGATCGAGgtgaagtata ... ttataatcagGGAGTTGAACTGGAGTTGCTCAAGCTCGAAGTTGCTGTCCAATCAATCCAT
EST: GGCTGGCTAGTAGAGACTGGGATTCTGTTGCCAAAAAGGAAAAGATCGAG GGAGTTGAACTGGAGTTGCTCAAGCTCGAAGTTGCTGTCCAATCAATCCAT
genomic: GGCTGGCTAGTAGAGACTGGGATTCTGTTGCCAAAAAGGAAAAGATCGAGgtgaagtata ... ttataatcagGGAGTTGAACTGGAGTTGCTCAAGCTCGAAGTTGCTGTCCAATCAATCCAT
ccagctgttgtcttgttttactccccttccatatgacatggagttttataatcagGGAGTTGAACTGGAGTTGCTCAAGCTCGAAGTTGCTGTCCAATCAATCCATGACAACCTGCTGCTACTAAAATCCAA
agttttataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaagtatattaaaaaatgaggcgttatactgccagctgttgtcttgttttactccccttccatatgacatggagttttataatcagGGAGTTGAACTGGAGTTGCTCAAGCTCGAAGTTGCTGTCCAATCAATCCATGACAACCTGCTGCTACTAAAATCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT