1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgttacagctgaactgctggagtccatgagtttttttttcatccaagtcctcattctcctcatgattggtctgataatccatcaaatgatttttctgcagGAACCATTTGTCAATATACCCGATGACAAAATAAGGGAGGCGCTCAAAGTTGTCTTAG
species | Zea mays |
transcript | GRMZM2G134389_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCGAGAAGAACGGGATCAGGCTCCACCAGTTCGGAATCGAGGGGCGAAAG GAACCATTTGTCAATATACCCGATGACAAAATAAGGGAGGCGCTCEST: gi|211509867|gb|FL433772.1|FL433772
genomic: TCGAGAAGAACGGGATCAGGCTCCACCAGTTCGGAATCGAGGGGCGAAAGgtaagaaaaa ... ttttctgcagGAACCATTTGTCAATATACCCGATGACAAAATAAGGGAGGCGCTC
EST: AACGGGATCAGGCTCCACCAGCTCGGAATCGAGGGGCGAAAG GAACCATTTGTCAATATACCCGATGACAAAATAAGGGAGGCGCTCAAAGTTEST: gi|211387917|gb|FL301248.1|FL301248
genomic: AACGGGATCAGGCTCCACCAGTTCGGAATCGAGGGGCGAAAGgtaagaaaaa ... ttttctgcagGAACCATTTGTCAATATACCCGATGACAAAATAAGGGAGGCGCTCAAAGTT
EST: TCGAGAAGAACGGGATCAGGCTCCACCAGTTCGGAATCGAGGGGCGAAAG GAACCATTTGTCAATATACCCGATGACAAAATAAGGGAGGCGCTCAAAGEST: gi|5555286|gb|AI881237.1|AI881237
genomic: TCGAGAAGAACGGGATCAGGCTCCACCAGTTCGGAATCGAGGGGCGAAAGgtaagaaaaa ... ttttctgcagGAACCATTTGTCAATATACCCGATGACAAAATAAGGGAGGCGCTCAAAG
EST: TCGAGAAGAACGGGATCAGGCTCCACCAGTTCGGAATCGAGGGGCGAAAG GAACCATTTGTCAATATACCCGATGACAAAATAAGGGAGGCGCTCAAAGTTEST: gi|5555280|gb|AI881231.1|AI881231
genomic: TCGAGAAGAACGGGATCAGGCTCCACCAGTTCGGAATCGAGGGGCGAAAGgtaagaaaaa ... ttttctgcagGAACCATTTGTCAATATACCCGATGACAAAATAAGGGAGGCGCTCAAAGTT
EST: TCGAGAAGAACGGGATCAGGCTCCACCAGTTCGGAATCGAGGGGCGAAAG GAACCATTTGTCAATATACCCGATGACAAAATAAGGGAGGCGCTCAAAGTTEST: gi|211385286|gb|FL301233.1|FL301233
genomic: TCGAGAAGAACGGGATCAGGCTCCACCAGTTCGGAATCGAGGGGCGAAAGgtaagaaaaa ... ttttctgcagGAACCATTTGTCAATATACCCGATGACAAAATAAGGGAGGCGCTCAAAGTT
EST: TCGAGAAGAACGGGATCAGGCTCCACCAGTTCGGAATCGAGGGGCGAAAG GAACCATTTGTCAATATACCCCGATGACAAAATAEST: gi|5555378|gb|AI881329.1|AI881329
genomic: TCGAGAAGAACGGGATCAGGCTCCACCAGTTCGGAATCGAGGGGCGAAAGgtaagaaaaa ... ttttctgcagGAACCATTTGTCAATATACCC-GATGACAAAATA
EST: TCGAGAAGAACGGGATCAGGCTCCACCAGTTCGGAATCGAGGGGCGAAAG GAACCATTTGTCAATATACCCGATGACAAAATAAGGGAGGCGCTCAAAGTTEST: gi|93281321|gb|EB673585.1|EB673585
genomic: TCGAGAAGAACGGGATCAGGCTCCACCAGTTCGGAATCGAGGGGCGAAAGgtaagaaaaa ... ttttctgcagGAACCATTTGTCAATATACCCGATGACAAAATAAGGGAGGCGCTCAAAGTT
EST: TCGAGAAGAACGGGATCAGGCTCCACCAGTTCGGAATCGAGGGGCGAAAG GAACCATTTGTCAATATACCCGATGACAAAATAAGGGAGGCGCTCAAAGTTEST: gi|211387907|gb|FL301238.1|FL301238
genomic: TCGAGAAGAACGGGATCAGGCTCCACCAGTTCGGAATCGAGGGGCGAAAGgtaagaaaaa ... ttttctgcagGAACCATTTGTCAATATACCCGATGACAAAATAAGGGAGGCGCTCAAAGTT
EST: TCGAGAAGAACGGGATCAGGCTCCACCAGTTCGGAATCGAGGGGCGAAAG GAACCATTTGTCAATATACCCGATGACAAAATAAGGGAGGCGCTCEST: gi|50339825|gb|CO534951.1|CO534951
genomic: TCGAGAAGAACGGGATCAGGCTCCACCAGTTCGGAATCGAGGGGCGAAAGgtaagaaaaa ... ttttctgcagGAACCATTTGTCAATATACCCGATGACAAAATAAGGGAGGCGCTC
EST: TCGAGAAGAACGGGATCAGGCTCCACCAGTTCGGAATCGAGGGGCGAAAG GAACCATTTGTCAATATACCCGATGACAAAATAAGGGAGGCGCTCAAAGTTEST: gi|211385282|gb|FL301229.1|FL301229
genomic: TCGAGAAGAACGGGATCAGGCTCCACCAGTTCGGAATCGAGGGGCGAAAGgtaagaaaaa ... ttttctgcagGAACCATTTGTCAATATACCCGATGACAAAATAAGGGAGGCGCTCAAAGTT
EST: TCGAGAAGAACGGGATCAGGCTCCACCAGTTCGGAATCGAGGGGCGAAAG GAAC-ATTTGTCAATATACCCGATGAEST: gi|32845463|gb|CD985144.1|CD985144
genomic: TCGAGAAGAACGGGATCAGGCTCCACCAGTTCGGAATCGAGGGGCGAAAGgtaagaaaaa ... ttttctgcagGAACCATTTGTCAATATACCCGATGA
EST: TCGAGAAGAACGGGATCAGGCTCCACCAGTTCGGAATCGAGGGGCGAAAG GAACCATTTGTCAATATACCCGATGACAAAATAAGGGAGGCGCTCAAAGTTEST: gi|211387914|gb|FL301245.1|FL301245
genomic: TCGAGAAGAACGGGATCAGGCTCCACCAGTTCGGAATCGAGGGGCGAAAGgtaagaaaaa ... ttttctgcagGAACCATTTGTCAATATACCCGATGACAAAATAAGGGAGGCGCTCAAAGTT
EST: TCGAGAAGAACGGGATCAGGCTCCACCAGTTCGGAATCGAGGGGCGAAAG GAACCATTTGTCAATATACCCGATGACAAAATAAGGGAGGCGCEST: gi|78087468|gb|DV515861.1|DV515861
genomic: TCGAGAAGAACGGGATCAGGCTCCACCAGTTCGGAATCGAGGGGCGAAAGgtaagaaaaa ... ttttctgcagGAACCATTTGTCAATATACCCGATGACAAAATAAGGGAGGCGC
EST: TCGAGAAGAACGGGATCAGGCTCCACCAGTTCGGAATCGAGGGGCGAAAG GAACCATTTGTCAATATACCCGATGACAAAATAAGGGAGGCGCTCAAAGTTEST: gi|211387912|gb|FL301243.1|FL301243
genomic: TCGAGAAGAACGGGATCAGGCTCCACCAGTTCGGAATCGAGGGGCGAAAGgtaagaaaaa ... ttttctgcagGAACCATTTGTCAATATACCCGATGACAAAATAAGGGAGGCGCTCAAAGTT
EST: TCGAGAAGAACGGGATCAGGCTCCACCAGTTCGGAATCGAGGGGCGAAAG GAACCATTTGTCAATEST: gi|76294316|gb|DV033884.1|DV033884
genomic: TCGAGAAGAACGGGATCAGGCTCCACCAGTTCGGAATCGAGGGGCGAAAGgtaagaaaaa ... ttttctgcagGAACCATTTGTCAAT
EST: TCGAGAAGAACGGGATCAGGCTCCACCAGTTCGGAATCGAGGGGCGAAAG GAACCATTTGTCAATATACCCGATGACAAAATAAGGGAGGCGCTCAAAGTT
genomic: TCGAGAAGAACGGGATCAGGCTCCACCAGTTCGGAATCGAGGGGCGAAAGgtaagaaaaa ... ttttctgcagGAACCATTTGTCAATATACCCGATGACAAAATAAGGGAGGCGCTCAAAGTT
agtcctcattctcctcatgattggtctgataatccatcaaatgatttttctgcagGAACCATTTGTCAATATACCCGATGACAAAATAAGGGAGGCGCTCAAAGTTGTCTTAG
gtctgat putative branch site (score: 51)
tttttctgc putative PPT
atcaaatgattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttacagctgaactgctggagtccatgagtttttttttcatccaagtcctcattctcctcatgattggtctgataatccatcaaatgatttttctgcagGAACCATTTGTCAATATACCCGATGACAAAATAAGGGAGGCGCTCAAAGTTGTCTTAG
- - acagctg
- - - - - - actgctg
- - - - - - - - - - -gtccatg
- - - - - - - - - - - - - - - - - - - -catccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catcaaa