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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcaagtgtactccctgttacgttatttgtattagtactgatgaattatcatcctggttacataatgtagtcatgtacctacatatgccagttgatacattcctctgatcatgaacagagaacaaccagcgctgttgggtattttttatccaatttttttagtgcagctctgatttctccaatctattttgaagGCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAAAGATCAGTGGAGCCCAGCCCTTACCTTGAAGACTGCGCTCCTTTCCCTT

Basic information

species Zea mays
transcript GRMZM2G134176_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G134176_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g70140.1 (Oryza sativa), 3'ss of exon 2
gtatgcaagtgtactccctgttacgttatttgtattagtactgatgaattatcatcctggttacataatgtagtcatgtacctacatatgccagttgatacattcctctgatcatgaacagagaacaacc--agcgctgttgggtattttttatccaatttttttagtgcagctctgatttctccaatctattttgaagGCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAAAGATCAGTGGAGCCCAGCCCTTACCTTGAAGACTGCGCTCCTTTCCCTT
                                                                                                  |            |   ||     | |  ||   | |  |  |||   || ||||   |    |   |||   | | |   | ||||||||||| |||||||||||||||||| ||||||||||| |||||||| ||||||||||| ||||| || || ||||||||||||||||| |||||||| || || |||||||| 
-------------------------------------------------------------------------------------------------ttgtgacttatcagttgcgagtttgggattacttgaactttactggcgcttctttactgataactacaagtcttgattt--ctactccaatctatgttgaagGCACCCTAACATTAGCAGCCAAAACGGAGCAATCTGCTTGGACATACTGAAGGACCAATGGAGCCCAGCCCTTACATTGAAGACGGCACTGCTTTCCCTC

upper sequence: GRMZM2G134176_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA06G17470.3 (Glycine max), 3'ss of exon 2
gtatgcaagtgtactccctgttacgttatttgtattagtactgatgaattatcatcctggttacataatgtagtcatgtacc-tacatatgccagttgatacattcctctgatcatgaacagagaacaaccagcgctgttgggtattttttatccaatttttttagtgcagctctgatttctccaatctattttgaagGCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAAAGATCAGTGGAGCCCAGCCCTTACCTTGAAGACTGCGCTCCTTTCCCTT
                                                                         | ||| |    | ||||   | || || |||| || ||           | || || | |    ||||  || | | |     || ||||| | | |  |             |  |  ||||||||| ||||| ||||||||||||| |||||| |||||| |||| ||  |||| || |||||||||||||| || ||  |||||||||| || |||||  | 
-------------------------------------------------------------------------ttatgcattgcaaatataatatttaatgcattactatggc---------ataataatctgtttggttgattaatgtgtg---gatgttttttgcgtatgt-------------taaacattgaagGCATCCTAATATCAGCAGCCAAAGTGGAGCTATTTGCCTGGATATCTTGAAGGACCAGTGGAGCCCAGCACTCACTCTGAAGACTGCACTTCTTTCTGTG

upper sequence: GRMZM2G134176_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA04G37620.3 (Glycine max), 3'ss of exon 3
gtatgcaagtgtactccctgttacgttatttgtattagtactgatgaattatcatcctggttacataatgtagtcatgtacc-tacatatgccagttgatacattcctctgatcatgaacagagaacaaccagcgctgttgggtattttttatccaatttttttagtgcagctctgatttctccaatctattttgaagGCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAAAGATCAGTGGAGCCCAGCCCTTACCTTGAAGACTGCGCTCCTTTCCCTT
                                                                         | ||| |    | ||||  || || || |||| || ||          || || |  | |     |||| |  ||  | |     |||||  ||| |  |             |  |  ||||||||| ||||| ||||||||||||| |||||| |||||| |||| ||  |||| || |||||||||||||| || ||  |||||||||| || |||||  | 
------------------------------------------------------------------------cttatgcattgcaaatatagcaattaatgcattactatgg---------gaaaatagtctgt----ttggttgattaatgtatggatttttgtgtgtatgt-------------taaacattgaagGCATCCTAATATCAGCAGCCAAAGTGGAGCTATTTGCCTGGATATCTTGAAGGACCAGTGGAGCCCAGCACTCACTCTGAAGACTGCACTTCTTTCTGTG

upper sequence: GRMZM2G134176_T02 (Zea mays), 3'ss of exon 2
lower sequence: Vv17s0000g00610.t01 (Vitis vinifera), 3'ss of exon 2
gtatgcaagtgtactccctgttacgttatttgtattagtactgatgaattatcatcctggttacataatgtagtcatgtacctacatatgccagttgatacattcctctgatcatgaacagagaacaac-cagcgctgttgggtattttttatccaatttttttagtgcagctctgatttctcca-----atc-tattttgaagGCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAAAGATCAGTGGAGCCCAGCCCTTACCTTGAAGACTGCGCTCCTTTCCCTT
                                                                                                       ||||  |  |||||  | || | |||         ||||  | ||  | |   |      ||    |    |  ||| | ||     |||  || || |||||||||||| |||||||| |||| ||||||||||||||||||||||||||| || ||||||||||| || |||||  ||||||| || ||||||||  | 
-------------------------------------------------------------------------------------------------------tccttcgtgcatga-taaagcataacgtcaaataattggtcagttcatctttgagacgagtaacataagaatcctttttgcatgtgcatcacatattcaagGCACCCTAATATCAGCAGTCAAAGTGGAGCAATTTGCTTGGACATTCTGAAGGACCAGTGGAGCCCTGCACTTACTCTGAAGACAGCACTCCTTTCTGTA

upper sequence: GRMZM2G134176_T02 (Zea mays), 3'ss of exon 2
lower sequence: EFJ07315 (Selaginella moellendorffii), 3'ss of exon 2
gtatgcaagtgtactccctgttacgttatttgtattagtactgatgaattatcatcctggttacataatgtagtcatgtacctacatatgccagttgatacattcctctgatcatgaacagagaacaaccagcgctgttgggtattttttatccaatttttttagtgcagctctgatttctccaatctattttga--agGCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAAAGATCAGTGGAGCCCAGCCCTTACCTTGAAGACTGCGCTCCTTTCCCTT
                                                                                                      |   |  || |  ||  | |||  ||| |    | |   || ||||||      ||  |||  ||| | |||  | ||     | || || |   ||||| || || |||||||||||||||||||| |||||| | |||||||| ||||| ||||||||||| || || ||| | ||||| || || ||||| || 
-----------------------------------------------------------------------------------------------------gtgagtgagagctcgagaaaagaggaacaaaaaatct--agtttttttt------ttcctttgatgctgatcttgtctcct---tttacttcgcccagGCATCCCAATATCAGCAGCCAAAATGGAGCCATTTGCCTAGACATTCTCAAAGACCAGTGGAGCCCGGCTCTCACCCTCAAGACGGCTCTACTTTCTCTC

upper sequence: GRMZM2G134176_T02 (Zea mays), 3'ss of exon 2
lower sequence: EFJ27483 (Selaginella moellendorffii), 3'ss of exon 2
gtatgcaagtgtactccctgttacgttatttgtattagtactgatgaattatcatcctggttacataatgtagtcatgtacctacatatgccagttgatacattcctctgatcatgaacagagaacaaccagcgctgttgggtattttttatccaatttttttagtgcagctctgatttctccaatctattttga--agGCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAAAGATCAGTGGAGCCCAGCCCTTACCTTGAAGACTGCGCTCCTTTCCCTT
                                                                                                      |   |  || || ||  | |||  ||| |    |  | | | ||||||      ||| |||  ||| | |||  | ||     | || ||||   ||||| || || |||||||||||||| ||||| |||||| | |||||||| ||||| ||||||||||| || || ||  | ||||| || || ||||| || 
-----------------------------------------------------------------------------------------------------gtgagtgagagcacgagaaaagaggaacaaaaaat-ctagttttttttt------tttctttgatgctgatcttgtctcct---tttactttgcccagGCATCCCAATATCAGCAGCCAAAACGGAGCCATTTGCCTAGACATTCTCAAAGACCAGTGGAGCCCGGCTCTCACTCTCAAGACGGCTCTACTTTCTCTC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38229682|gb|CF919995.1|CF919995
EST:     GTGGATATCCCTTTGAGCCTCCGAAGATGCAGTTCATCACCAAAGTATG                         GCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
genomic: GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATGgtatgcaagt ... tattttgaagGCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
EST: gi|211011836|gb|FL066262.1|FL066262
EST:     GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG                         GCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
genomic: GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATGgtatgcaagt ... tattttgaagGCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
EST: gi|19822046|gb|BQ048070.1|BQ048070
EST:     GTGGATATCCCTTTGAGCCTCCGAAGATGCAGTTCATCACCAAAGTATG                         GCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
genomic: GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATGgtatgcaagt ... tattttgaagGCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
EST: gi|71305841|gb|DR789046.1|DR789046
EST:     GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG                         GCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
genomic: GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATGgtatgcaagt ... tattttgaagGCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
EST: gi|76288098|gb|DV027666.1|DV027666
EST:     GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG                         GCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
genomic: GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATGgtatgcaagt ... tattttgaagGCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
EST: gi|78078206|gb|DV506621.1|DV506621
EST:     GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG                         GCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
genomic: GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATGgtatgcaagt ... tattttgaagGCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
EST: gi|5929011|gb|AW056303.1|AW056303
EST:     GTGGATATCCCTTTGAGCCTCCGAAGATGCAGTTCATCACCAAAGTATG                         GCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
genomic: GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATGgtatgcaagt ... tattttgaagGCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
EST: gi|148935183|gb|EC879220.2|EC879220
EST:     GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG                         GCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
genomic: GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATGgtatgcaagt ... tattttgaagGCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
EST: gi|60348326|gb|DN215299.1|DN215299
EST:     TGCACTTCATCACCAAAGTATG                         GCACCCTAACATCACCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
genomic: TGCAGTTCATCACCAAAGTATGgtatgcaagt ... tattttgaagGCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
EST: gi|31348575|gb|CD432932.1|CD432932
EST:     GTGGATATCCCTTTGAGCCTCCGAAGATGCAGTTCATCACCAAAGTATG                         GCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
genomic: GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATGgtatgcaagt ... tattttgaagGCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
EST: gi|18659337|gb|BM500284.1|BM500284
EST:     GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG                         GCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
genomic: GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATGgtatgcaagt ... tattttgaagGCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
EST: gi|211011839|gb|FL066265.1|FL066265
EST:     GTGGATATCCCTTTGAGCCTCCGAAGATGCAGTTCATCACCAAAGTATG                         GCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
genomic: GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATGgtatgcaagt ... tattttgaagGCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
EST: gi|74243460|gb|DT651374.1|DT651374
EST:     GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG                         GCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
genomic: GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATGgtatgcaagt ... tattttgaagGCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
EST: gi|211183787|gb|FL226959.1|FL226959
EST:     GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG                         GCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCNTGGACATTCTGAA
genomic: GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATGgtatgcaagt ... tattttgaagGCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
EST: gi|92088246|gb|EB484477.1|EB484477
EST:     GTGGATATCCCTTTGAGCCTCCGAAGATGCAGTTCATCACCAAAGTATG                         GCACCCTAACATCAGCAGCCAAAACGGAGCAATTTGCTTGGACATTCTGAA
genomic: GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATGgtatgcaagt ... tattttgaagGCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
EST: gi|211181392|gb|FL226953.1|FL226953
EST:     GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG                         GCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
genomic: GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATGgtatgcaagt ... tattttgaagGCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
EST: gi|211183786|gb|FL226958.1|FL226958
EST:     GTGGATATCCCTTTGAGCCTCCGAAGATGCAGTTCATCASCAAAGTATG                         GCACCCTAACATCAGCAGCCAAAATGGGAGCAATTTGCTTGGACATTCTGA
genomic: GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATGgtatgcaagt ... tattttgaagGCACCCTAACATCAGCAGCCAAAATGG-AGCAATTTGCTTGGACATTCTGA
EST: gi|211181395|gb|FL226956.1|FL226956
EST:     GTGGATATCCCTTTGAGCCTCCGAAGATGCAGTTCATCACCAAAGTATG                         GCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
genomic: GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATGgtatgcaagt ... tattttgaagGCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
EST: gi|31909696|gb|CD651049.1|CD651049
EST:     GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG                         GCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
genomic: GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATGgtatgcaagt ... tattttgaagGCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
EST: gi|71333057|gb|DR803563.1|DR803563
EST:     AAGATGCAGTTCATCACCAAAGTATG                         GCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
genomic: AAGATGCAGTTCATCACCAAAGTATGgtatgcaagt ... tattttgaagGCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
EST: gi|211183797|gb|FL226969.1|FL226969
EST:     GTGGATATCCCCTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG                         GCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
genomic: GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATGgtatgcaagt ... tattttgaagGCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
EST: gi|71596377|gb|DR907128.1|DR907128
EST:     GTGGATATCCCTTTGAGCCTCCGAAGATGCAGTTCATCACCAAAGTATG                         GCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
genomic: GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATGgtatgcaagt ... tattttgaagGCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
EST: gi|211183791|gb|FL226963.1|FL226963
EST:     GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG                         GCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTG
genomic: GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATGgtatgcaagt ... tattttgaagGCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTG
EST: gi|211181394|gb|FL226955.1|FL226955
EST:     GTGGATATCCCTTTGAGCCTCCGAAGATGCAGTTCATCACCAAAGTATG                         GCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
genomic: GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATGgtatgcaagt ... tattttgaagGCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
EST: gi|148957852|gb|EC904003.2|EC904003
EST:     GTGGATATCCCTTTGAGCCGCCCGAAGATGCAGTTCATCACCAAAGTATG                         GCACCCTAACATCAGCAGCCAAAATGGAGCATTTTGCTTGGACATTCTGAA
genomic: GTGGATATCCCTTTGAGCCGCC-GAAGATGCAGTTCATCACCAAAGTATGgtatgcaagt ... tattttgaagGCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
EST: gi|19822034|gb|BQ048058.1|BQ048058
EST:     GTGGATATCCCTTTGAGCCTCCGAAGATGCAGTTCATCACCAAAGTATG                         GCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
genomic: GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATGgtatgcaagt ... tattttgaagGCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
EST: gi|78104812|gb|DV523230.1|DV523230
EST:     GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG                         GCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
genomic: GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATGgtatgcaagt ... tattttgaagGCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
EST: gi|76917766|gb|DV166996.1|DV166996
EST:     GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG                         GCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
genomic: GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATGgtatgcaagt ... tattttgaagGCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
EST: gi|15499307|gb|BI595820.1|BI595820
EST:     GTGGATATCCCTTTGAGCCTCCGAAGATGCAGTTCATCACCAAAGTATG                         GCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
genomic: GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATGgtatgcaagt ... tattttgaagGCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
EST: gi|71333059|gb|DR803564.1|DR803564
EST:     GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG                         GCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
genomic: GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATGgtatgcaagt ... tattttgaagGCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
EST: gi|148950957|gb|EC896595.2|EC896595
EST:     GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG                         GCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
genomic: GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATGgtatgcaagt ... tattttgaagGCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
EST: gi|60338191|gb|DN205164.1|DN205164
EST:     GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG                         GCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
genomic: GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATGgtatgcaagt ... tattttgaagGCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
EST: gi|76917765|gb|DV166995.1|DV166995
EST:     GGGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG                         GCACCCTAACATCAGCAGCCAAAAGGGAGCAATTTGCTTGGACATTCTGAA
genomic: GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATGgtatgcaagt ... tattttgaagGCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
EST: gi|50336276|gb|CO531402.1|CO531402
EST:     GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG                         GCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
genomic: GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATGgtatgcaagt ... tattttgaagGCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
EST: gi|29544832|gb|CB605440.1|CB605440
EST:     CGAAGATGCAGTTCATCACCAAAGTATG                         GCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
genomic: CGAAGATGCAGTTCATCACCAAAGTATGgtatgcaagt ... tattttgaagGCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
EST: gi|211183796|gb|FL226968.1|FL226968
EST:     GTGGATATCCCTTTGARCCTCCGAAGATGCAGTTCATCACCAAAGTATG                         GCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGC
genomic: GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATGgtatgcaagt ... tattttgaagGCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGC
EST: gi|60394349|gb|DN227219.1|DN227219
EST:     GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG                         GCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
genomic: GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATGgtatgcaagt ... tattttgaagGCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
EST: gi|29576715|gb|CB616827.1|CB616827
EST:     GNGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG                         GCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
genomic: GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATGgtatgcaagt ... tattttgaagGCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
EST: gi|71761684|gb|DR959621.1|DR959621
EST:     GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG                         GCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
genomic: GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATGgtatgcaagt ... tattttgaagGCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
EST: gi|211011837|gb|FL066263.1|FL066263
EST:     GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG                         GCACCCTAACATYAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
genomic: GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATGgtatgcaagt ... tattttgaagGCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
EST: gi|67021220|gb|CO449969.1|CO449969
EST:     GTGGATATCCCTTTGAGCCTCCGAAGATGCAGTTCATCACCAAAGTATG                         GCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
genomic: GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATGgtatgcaagt ... tattttgaagGCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
EST: gi|211011838|gb|FL066264.1|FL066264
EST:     GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG                         GCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
genomic: GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATGgtatgcaagt ... tattttgaagGCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
EST: gi|78104811|gb|DV523229.1|DV523229
EST:     GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATG                         GCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA
genomic: GTGGATATCCCTTTGAGCCGCCGAAGATGCAGTTCATCACCAAAGTATGgtatgcaagt ... tattttgaagGCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattttttatccaatttttttagtgcagctctgatttctccaatctattttgaagGCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAAAGATCAGTGGAGCCCAGCCCTTACCTTGAAGACTGCGCTCCTTTCCCTT
                            ctctgat  putative branch site (score: 4)
                                           tctatttt  putative PPT
     tttatccaattttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgcaagtgtactccctgttacgttatttgtattagtactgatgaattatcatcctggttacataatgtagtcatgtacctacatatgccagttgatacattcctctgatcatgaacagagaacaaccagcgctgttgggtattttttatccaatttttttagtgcagctctgatttctccaatctattttgaagGCACCCTAACATCAGCAGCCAAAATGGAGCAATTTGCTTGGACATTCTGAAAGATCAGTGGAGCCCAGCCCTTACCTTGAAGACTGCGCTCCTTTCCCTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA