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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtttctggtttttgagttgtttgctgttacgattgtgggagtgtatcatgtaaatgccggcaatgaatgcttagccgatcctttggtcgtctctgttggttcaattgtcctctacttcctatccgctgtgttagtttcaaattcttcccccctgcagATTCTTATGGAGCTTTCATTCAGGCGAACGAGGGTGAGCCAGTGTACGATTTCTGCTGGTACCCGTGTATGTCCTTGTCTG

Basic information

species Zea mays
transcript GRMZM2G133749_T01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37420996|gb|CF648194.1|CF648194
EST:     AGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGAAAGTGAAG                         ATTCTTATGGAGCTTTCATTCAGGCGAACGAGGGTGAGCCAGTGTACGATT
genomic: AGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGAAAGTGAAGgtgcgtttct ... ccccctgcagATTCTTATGGAGCTTTCATTCAGGCGAACGAGGGTGAGCCAGTGTACGATT
EST: gi|78120250|gb|DV538634.1|DV538634
EST:     AGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGAAAGTGAAG                         ATTCTTATGGAGCTTTCATTCAGGCGAACGAGGGTGAGCCAGTGTACGATT
genomic: AGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGAAAGTGAAGgtgcgtttct ... ccccctgcagATTCTTATGGAGCTTTCATTCAGGCGAACGAGGGTGAGCCAGTGTACGATT
EST: gi|211122217|gb|FL355462.1|FL355462
EST:     AGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGAAAGTGAAG                         ATTCTTATGGAGCTTTCATTCAGGCGAACGAGGGTGAGCCAGTGTACGATT
genomic: AGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGAAAGTGAAGgtgcgtttct ... ccccctgcagATTCTTATGGAGCTTTCATTCAGGCGAACGAGGGTGAGCCAGTGTACGATT
EST: gi|78110507|gb|DV528917.1|DV528917
EST:     TGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGAAAGTGAAG                         ATTCTTATGGAGCTTTCATTCAGGCGAACGAGGGTGAGCCAGTGTACGATT
genomic: TGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGAAAGTGAAGgtgcgtttct ... ccccctgcagATTCTTATGGAGCTTTCATTCAGGCGAACGAGGGTGAGCCAGTGTACGATT
EST: gi|71437477|gb|DR818527.1|DR818527
EST:     AGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGAAAGTGAAG                         ATTCTTATGGAGCTTTCATTCAGGCGAACGAGGGTGAGCCAGTGTACGATT
genomic: AGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGAAAGTGAAGgtgcgtttct ... ccccctgcagATTCTTATGGAGCTTTCATTCAGGCGAACGAGGGTGAGCCAGTGTACGATT
EST: gi|71449230|gb|DR830280.1|DR830280
EST:     AGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGAAAGTGAAG                         ATTCTTATGGAGCTTTCATTCAGGCGAACGAGGGTGAGCCAGTGTACGATT
genomic: AGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGAAAGTGAAGgtgcgtttct ... ccccctgcagATTCTTATGGAGCTTTCATTCAGGCGAACGAGGGTGAGCCAGTGTACGATT
EST: gi|31558468|gb|CD527680.1|CD527680
EST:     AGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGAAAGTGAAG                         ATTCTTATGGAGCTTTCATTCAGGCGAACGAGGGTGAGCCAGTGTACGATT
genomic: AGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGAAAGTGAAGgtgcgtttct ... ccccctgcagATTCTTATGGAGCTTTCATTCAGGCGAACGAGGGTGAGCCAGTGTACGATT
EST: gi|76287082|gb|DV026650.1|DV026650
EST:     AGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGAAAGTGAAG                         ATTCTTATGGAGCTTTCATTCAGGCGAACGAGGGTGAGCCAGTGTACGATT
genomic: AGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGAAAGTGAAGgtgcgtttct ... ccccctgcagATTCTTATGGAGCTTTCATTCAGGCGAACGAGGGTGAGCCAGTGTACGATT
EST: gi|86475107|gb|DY241477.1|DY241477
EST:     AGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCAAAAGTGAAG                         ATTCTTATGGAGCTTTCATTCAGGCGAACGAGGGTGAGCCAGTGTACGATT
genomic: AGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGAAAGTGAAGgtgcgtttct ... ccccctgcagATTCTTATGGAGCTTTCATTCAGGCGAACGAGGGTGAGCCAGTGTACGATT
EST: gi|60394554|gb|DN227424.1|DN227424
EST:     AGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGAAAGTGAAG                         ATTCTTATGGAGCTTTCATTCAGGCGAACGAGGGTGAGCCAGTGTACGATT
genomic: AGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGAAAGTGAAGgtgcgtttct ... ccccctgcagATTCTTATGGAGCTTTCATTCAGGCGAACGAGGGTGAGCCAGTGTACGATT
EST: gi|211186698|gb|FL366147.1|FL366147
EST:     AGCGTACATTGCGGCGGAGCC-GTTGCCGAGGC-GCTGTCGAAAGTGAAG                         ATTCTTATGGAGCTTTCATTC
genomic: AGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGAAAGTGAAGgtgcgtttct ... ccccctgcagATTCTTATGGAGCTTTCATTC
EST: gi|211132517|gb|FL346748.1|FL346748
EST:     AGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGAAAGTGAAG                         ATTCTTATGGAGCTTTCATTCAGGCGAACGAGGGTGAGCCAGTGTACGATT
genomic: AGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGAAAGTGAAGgtgcgtttct ... ccccctgcagATTCTTATGGAGCTTTCATTCAGGCGAACGAGGGTGAGCCAGTGTACGATT
EST: gi|37418378|gb|CF646857.1|CF646857
EST:     CATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGAAAGTGAAG                         ATTCTTATGGAGCTTTCATTCAGGCGAACGAGGGTGAGCCAGTGTACGATT
genomic: CATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGAAAGTGAAGgtgcgtttct ... ccccctgcagATTCTTATGGAGCTTTCATTCAGGCGAACGAGGGTGAGCCAGTGTACGATT
EST: gi|78084101|gb|DV512494.1|DV512494
EST:     AGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGAAAGTGAAG                         ATTCTTATGGAGCTTTCATTCAGGCGAACGAGGGTGAGCCAGTGTACGATT
genomic: AGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGAAAGTGAAGgtgcgtttct ... ccccctgcagATTCTTATGGAGCTTTCATTCAGGCGAACGAGGGTGAGCCAGTGTACGATT
EST: gi|94478312|gb|EB707270.1|EB707270
EST:     AGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGAAAGTGAAG                         ATTCTTATGGAGCTTTCATTCAGGCGAACGAGGGTGAGCCAGTGTACGATT
genomic: AGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGAAAGTGAAGgtgcgtttct ... ccccctgcagATTCTTATGGAGCTTTCATTCAGGCGAACGAGGGTGAGCCAGTGTACGATT
EST: gi|211083828|gb|FL344180.1|FL344180
EST:     GCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCAGAA-GTGAAG                         ATTCTTATGGAGCTTTCATTCAGGCGAACGAGGGTGAGCCAGTGTACGATT
genomic: GCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTC-GAAAGTGAAGgtgcgtttct ... ccccctgcagATTCTTATGGAGCTTTCATTCAGGCGAACGAGGGTGAGCCAGTGTACGATT
EST: gi|78112774|gb|DV531168.1|DV531168
EST:     AGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGAAAGTGAAG                         ATTCTTATGGAGCTTTCATTCAGGCGAACGAGGGTGAGCCAGTGTACGATT
genomic: AGCGTACATTGCGGCGGAGCCCGTTGCCGAGGCCGCTGTCGAAAGTGAAGgtgcgtttct ... ccccctgcagATTCTTATGGAGCTTTCATTCAGGCGAACGAGGGTGAGCCAGTGTACGATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattgtcctctacttcctatccgctgtgttagtttcaaattcttcccccctgcagATTCTTATGGAGCTTTCATTCAGGCGAACGAGGGTGAGCCAGTGTACGATTTCTGCTGGTACCCGTGTATGTCCTTGTCTG
                                       ttcttcccccctgc  CT-rich tract
                                tttcaaatt  TA-rich tract