1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...caacgtgccttctttatgttctgagacgattaaagatcatctccttcactaatagtgatccatcagtgccttctgattcactattctttgtgccgtttagGTTATTACTACGCACCACACCTCTTTCCTTGGCTTATTTACTCTACATG
species | Zea mays |
transcript | GRMZM2G133226_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTCTCTCTTCGTATAATTTCCCTTGTGCGAATGTCATCACACTCCTTCAG AEST: gi|148947034|gb|EC892331.2|EC892331
genomic: CTCTCTCTTCGTATAATTTCCCTTGTGCGAATGTCATCACACTCCTTCAGgtactggatg ... tgccgtttag-
EST: CTCTCTCTTCGTATAATTTCCCTTGTGCGAATGTCATCACACTCCTTCAG AEST: gi|148947034|gb|EC892331.2|EC892331
genomic: CTCTCTCTTCGTATAATTTCCCTTGTGCGAATGTCATCACACTCCTTCAGgtactggatg ... tgccgtttag-
EST: CTCTCTCTTCGTATAATTTCCCTTGTGCGAATGTCATCACACTCCTTCAG AEST: gi|91054599|gb|EB165017.1|EB165017
genomic: CTCTCTCTTCGTATAATTTCCCTTGTGCGAATGTCATCACACTCCTTCAGgtactggatg ... tgccgtttag-
EST: CTCTCTCTTCGTATAATTTCCCTTGTGCGAATGTCATCACACTCCTTCAG GTTATTACTACGCACCACACCTCTTTCCTTGGCTTATTTACTCTACATG
genomic: CTCTCTCTTCGTATAATTTCCCTTGTGCGAATGTCATCACACTCCTTCAGgtactggatg ... tgccgtttagGTTATTACTACGCACCACACCTCTTTCCTTGGCTTATTTACTCTACATG
tcactaatagtgatccatcagtgccttctgattcactattctttgtgccgtttagGTTATTACTACGCACCACACCTCTTTCCTTGGCTTATTTACTCTACATG
ttctttgt CT-rich tract
tattcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caacgtgccttctttatgttctgagacgattaaagatcatctccttcactaatagtgatccatcagtgccttctgattcactattctttgtgccgtttagGTTATTACTACGCACCACACCTCTTTCCTTGGCTTATTTACTCTACATG
- - -tgccttc
- - - - - - - - tgttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttctg