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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aatcttctggttgctgttggctaaacttctagtgtacatttgtattctatcatttgtgttttttctcccttctttgttaacacttaacaaacatgtgcagATGGTGTGCTCAACGTGCCTTCTTTATGTTCTGAGACGATTAAAGATCATCTCCTTCACTAATAGTGATCCATCAGTGCCTTCTGATTCACTATTCTTTG

Basic information

species Zea mays
transcript GRMZM2G133226_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G133226_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os02g40030.2 (Oryza sativa), 3'ss of exon 2
aatcttctggttgctgttggctaaacttctagtgtacatttgtattctatcatttgtgtttttt--ctcccttctttgttaacacttaacaaacatgtgcagATGGTGTGCTCAACGTGCCTTCTTTATGTTCTGAGACGATTAAAGATCATCTCCTTCACTAATAGTGATCCATCAGTGCCTTCTGATTCACTATTCTTTG
 || |  |  |  ||||||   ||  |  |  || | || |||| |||     | |  | |  |  |||  || ||| || |||||||| ||||||||||||||||||||||||||  ||||||||||||||||||| ||  ||||||| || || || || ||||| || ||||| |||||||||||| |  ||||||| |
-atttgata-tcactgttgatgaacttcttgatgcatatatgtaatctgctgctcgcatctcctgcctctttttttttttgacacttaataaacatgtgcagATGGTGTGCTCAACAGGCCTTCTTTATGTTCTGAGGCGGCTAAAGATAATTTCATTTACAAATAGCGAGCCATCCGTGCCTTCTGATGCGTTATTCTTCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148933236|gb|EC876886.2|EC876886
EST:     CTCTCTCTTCGTATAATTTCCCTTGTGCGAATGTCATCACACTCCTTCAG                         ATGGTGTGCTCAACGTGCCTTCTTTATGTTCTGAGACGATTAAAGATCATC
genomic: CTCTCTCTTCGTATAATTTCCCTTGTGCGAATGTCATCACACTCCTTCAGgtactggatg ... acatgtgcagATGGTGTGCTCAACGTGCCTTCTTTATGTTCTGAGACGATTAAAGATCATC
EST: gi|71440136|gb|DR821186.1|DR821186
EST:     CTCTCTCTTCGTATAATTTCCCTTGTGCGAATGTCATCACACTCCTTCAG                         ATGGTGTGCTCAACGTGCCTTCTTTATGTTCTGAGACGATTAAAGATCATC
genomic: CTCTCTCTTCGTATAATTTCCCTTGTGCGAATGTCATCACACTCCTTCAGgtactggatg ... acatgtgcagATGGTGTGCTCAACGTGCCTTCTTTATGTTCTGAGACGATTAAAGATCATC
EST: gi|149014040|gb|EE043561.2|EE043561
EST:     CTCTCTCTTCGTATAATTTCCCTTGTGCGAATGTCATCACACTCCTTCAG                         ATGGTGTGCTCAACGTGCCTTCTTTATGTTCTGAGACGATTAAAGATCATC
genomic: CTCTCTCTTCGTATAATTTCCCTTGTGCGAATGTCATCACACTCCTTCAGgtactggatg ... acatgtgcagATGGTGTGCTCAACGTGCCTTCTTTATGTTCTGAGACGATTAAAGATCATC
EST: gi|148968927|gb|EE019612.2|EE019612
EST:     CTCTCTCTTCGTATAATTTCCCTTGTGCGAATGTCATCACACTCCTTCAG                         ATGGTGTGCTCAACGTGCCTTCTTTATGTTCTGAGACGATTAAAGATCATC
genomic: CTCTCTCTTCGTATAATTTCCCTTGTGCGAATGTCATCACACTCCTTCAGgtactggatg ... acatgtgcagATGGTGTGCTCAACGTGCCTTCTTTATGTTCTGAGACGATTAAAGATCATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctatcatttgtgttttttctcccttctttgttaacacttaacaaacatgtgcagATGGTGTGCTCAACGTGCCTTCTTTATGTTCTGAGACGATTAAAGATCATCTCCTTCACTAATAGTGATCCATCAGTGCCTTCTGATTCACTATTCTTTG
           tgtttttt  TA-rich tract