Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggatgcttctttctaccccttccaattcctccaagaattccaaaggcaaaccctcagtttgatccatgccttcctgtcggcgctataaaatccagtcctttctggtcaatacaatgccacgcttaggataattgacgaaactttattttgctatcatttggtaccagGTCCAAGAAAAGCAGGATTACAGAGATATTTTACAGGTTCAAGATAGCCATCATGATGTACA

Basic information

species Zea mays
transcript GRMZM2G132866_T01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211309887|gb|FL092752.1|FL092752
EST:     ATGTGGAGGAAGGCACCGTGCCGATTGCCGCGGANTGTGGTTCTAAAAAG                         GTCCAAGAAAAGCAGGATTACAGAGATATTTTACAGGTTCAAGATAGCCAT
genomic: ATGTGGAGGAAGGCACCGTGCCGATTGCCGCGGAGTGTGGTTCTAAAAAGgtaggatgct ... ttggtaccagGTCCAAGAAAAGCAGGATTACAGAGATATTTTACAGGTTCAAGATAGCCAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgccacgcttaggataattgacgaaactttattttgctatcatttggtaccagGTCCAAGAAAAGCAGGATTACAGAGATATTTTACAGGTTCAAGATAGCCATCATGATGTACA
                 aattgac  putative branch site (score: 3)
                         aaactttatttt  TA-rich tract