1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttggttcttgctagttagagaatcctctgaattttctatgattacatactatttatgttatcgggctagttcttagctttgtggctatatttgattacagGTGCTGCAGTTGGCTTCCGGTTGGACAGTCTTCTAAAACTTACAGATACCCGGGCAACAAATAATAAGATGACACTAATGCACTACCTCTGCAAG
species | Zea mays |
transcript | GRMZM2G132810_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAAGAAAATCCTTCTCCTTGGGAATACCCTGAACCAGGGAACTGCTAGAG GTGGTGGAGTTGGGTTCCGGNTTGGRCAGTCTTCTAAAACTTACAGATACCEST: gi|40335878|gb|CK369948.1|CK369948
genomic: GAAGAAAATCCTTCTCCTTGGGAATACCCTGAACCAGGGAACTGCTAGAGgtaacaataa ... ttgattacagGTGCTGCAGTTGGCTTCCGG-TTGGACAGTCTTCTAAAACTTACAGATACC
EST: GAAGAAAATCCTTCTCCTTGGGAATACCCTGAACCAGGGAACTGCTAGAG GTGCTGCAGTTGGCTTCCGGTTGGACAGTCTTCTAAAACTTACAGATACCCEST: gi|67041158|gb|CO467413.1|CO467413
genomic: GAAGAAAATCCTTCTCCTTGGGAATACCCTGAACCAGGGAACTGCTAGAGgtaacaataa ... ttgattacagGTGCTGCAGTTGGCTTCCGGTTGGACAGTCTTCTAAAACTTACAGATACCC
EST: GAAGAAAATCCTTCTCCTTGGGAATACCCTGAACCAGGGAACTGCTAGAG GTGCTGCAGTTGGCTTCCGGTTGGACAGTCTTCTAAAACTTTTTTATACCC
genomic: GAAGAAAATCCTTCTCCTTGGGAATACCCTGAACCAGGGAACTGCTAGAGgtaacaataa ... ttgattacagGTGCTGCAGTTGGCTTCCGGTTGGACAGTCTTCTAAAACTTACAGATACCC
atactatttatgttatcgggctagttcttagctttgtggctatatttgattacagGTGCTGCAGTTGGCTTCCGGTTGGACAGTCTTCTAAAACTTACAGATACCCGGGCAACAAATAATAAGATGACACTAATGCACTACCTCTGCAAG
atttgat putative branch site (score: 119)
tatatttgattaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttggttcttgctagttagagaatcctctgaattttctatgattacatactatttatgttatcgggctagttcttagctttgtggctatatttgattacagGTGCTGCAGTTGGCTTCCGGTTGGACAGTCTTCTAAAACTTACAGATACCCGGGCAACAAATAATAAGATGACACTAATGCACTACCTCTGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - ttcttgc
- - - - - - - - - - - - -tctgaat
- - - - - - - - - - - - - - - - - - - - - - - - - - ttatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtggct