1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttcgcatttctggaccttgtgtcacagtaatcagttcttaattattcgttgccatgcttctagtttgttgttttgacacatggcatgctttctccttcagGCTTATGATTTCACTCGAATACTGAGCTCCTTTTATTTCAAGGGGTATACTTTATTGACAAAAATACAGCGCATCGAATGGAACAATAG
species | Zea mays |
transcript | GRMZM2G132084_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATCTACTCGTTCCGTACACCTCTGTGCTCTTTGGCATTGTCCTCTGCAAGGTGEST: gi|211442016|gb|FL419342.1|FL419342
genomic: ATCTACTCGTTCCGTACACCTCTGTGCTCTTTGGCATTGTCCTCTGCAA---Ggtggtaggtt ... tctccttc
EST: ATCTACTCGTTCCGTACACCTCTGTGCTCTTTGGCATTGTCCTCTGCAAG GTGGCTTATGATTTCACTCGAATACTGAGCTCCTTTTATTTCAAGGGGTATEST: gi|211506260|gb|FL375259.1|FL375259
genomic: ATCTACTCGTTCCGTACACCTCTGTGCTCTTTGGCATTGTCCTCTGCAAGgtggtaggtt ... tctccttcagG---CTTATGATTTCACTCGAATACTGAGCTCCTTTTATTTCAAGGGGTAT
EST: ATCTACTCGTTCCGTACACCTCTGTGCTCTTTGGCATTGTCCTCTGCAAG GTGGCTTATGATTTCACTCGAATACTGAGCTCCTTTTATTTCAAGGGGTATEST: gi|38687922|gb|CK144953.1|CK144953
genomic: ATCTACTCGTTCCGTACACCTCTGTGCTCTTTGGCATTGTCCTCTGCAAGgtggtaggtt ... tctccttcagG---CTTATGATTTCACTCGAATACTGAGCTCCTTTTATTTCAAGGGGTAT
EST: ATCTACTCGTTCCGTACACCTCTGTGCTCTTTGGCATTGTCCTCTGCAAG GCTTATGATTTCACTCGAATACTGAGCTCCTTTTATTTCAAGGGGTATACTEST: gi|78076717|gb|DV505151.1|DV505151
genomic: ATCTACTCGTTCCGTACACCTCTGTGCTCTTTGGCATTGTCCTCTGCAAGgtggtaggtt ... tctccttcagGCTTATGATTTCACTCGAATACTGAGCTCCTTTTATTTCAAGGGGTATACT
EST: ATCTACTCGTTCCGTACACCTCTGTGCTCTTTGGCATTGTCCTCTGCAAG GTGGCTTATGATTTCACTCGAATACTGAGCTCCTTTTATTTCAAGGGGTAT
genomic: ATCTACTCGTTCCGTACACCTCTGTGCTCTTTGGCATTGTCCTCTGCAAGgtggtaggtt ... tctccttcagG---CTTATGATTTCACTCGAATACTGAGCTCCTTTTATTTCAAGGGGTAT
tcgttgccatgcttctagtttgttgttttgacacatggcatgctttctccttcagGCTTATGATTTCACTCGAATACTGAGCTCCTTTTATTTCAAGGGGTATACTTTATTGACAAAAATACAGCGCATCGAATGGAACAATAG
ttttgac putative branch site (score: 3)
catgctttctccttc putative PPT
ttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcgcatttctggaccttgtgtcacagtaatcagttcttaattattcgttgccatgcttctagtttgttgttttgacacatggcatgctttctccttcagGCTTATGATTTCACTCGAATACTGAGCTCCTTTTATTTCAAGGGGTATACTTTATTGACAAAAATACAGCGCATCGAATGGAACAATAG
- - - - -ctggacc
- - - - - - - - - - - - - - - - - - - - - - - -gttgcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggcatgc