1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagccacagtatattcttggactctgttccattgcaataattatatttcacagttgatgttatttaagcgaaaagacatattcattacatagttctgtccgtgaatttcacacttttgagaatgtaatttgaataaggatttgttgcaatgttttttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTATGTATCTTTTGCAGATAAATTTGGTGTTGTTTGGTTAGTCACTTTGCGG
species | Zea mays |
transcript | GRMZM2G131998_T04 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTAEST: gi|211051623|gb|FL294342.1|FL294342
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: AAACTTGTGAAGGGTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT AACTTCGGAGAAAGAGG-TCAGTGCAGTTGTTTAT-AGCCACGATGEST: gi|211048677|gb|FL294338.1|FL294338
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAA-GAGGGTCAGTGCAGTTGTT-ATTAGCAACGATG
EST: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT AACTTCGGAGAAGACGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTAEST: gi|87156923|gb|DY401712.1|DY401712
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTAEST: gi|211048668|gb|FL294329.1|FL294329
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT AACTTCGGAGAARAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTAEST: gi|211048667|gb|FL294328.1|FL294328
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGAC-TGTAEST: gi|89761079|gb|DY689237.1|DY689237
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTAEST: gi|89249366|gb|DY621152.1|DY621152
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTAEST: gi|211051635|gb|FL294354.1|FL294354
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTAEST: gi|148936297|gb|EC880380.2|EC880380
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTAEST: gi|211051632|gb|FL294351.1|FL294351
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTAEST: gi|71437750|gb|DR818800.1|DR818800
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTAEST: gi|148959295|gb|EE010708.2|EE010708
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTAEST: gi|211051631|gb|FL294350.1|FL294350
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTAEST: gi|211048669|gb|FL294330.1|FL294330
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT AACTTCGGAGAAGAGEST: gi|211048680|gb|FL294341.1|FL294341
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAG
EST: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTAEST: gi|22546288|gb|BU098599.1|BU098599
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTAEST: gi|4753448|gb|AI657358.1|AI657358
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTAEST: gi|148945698|gb|EC890971.2|EC890971
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTAEST: gi|148973467|gb|EE024565.2|EE024565
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTAEST: gi|149081963|gb|EE171128.2|EE171128
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTAEST: gi|211051633|gb|FL294352.1|FL294352
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT AACTTCGGAGAAGACGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTAEST: gi|211048671|gb|FL294332.1|FL294332
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTAEST: gi|211051625|gb|FL294344.1|FL294344
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTAEST: gi|78106892|gb|DV525310.1|DV525310
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTAEST: gi|211048673|gb|FL294334.1|FL294334
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTAEST: gi|26558708|gb|CA830943.1|CA830943
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTA
EST: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTAEST: gi|211048679|gb|FL294340.1|FL294340
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTAEST: gi|78081795|gb|DV510207.1|DV510207
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTAEST: gi|20811129|gb|BQ295607.1|BQ295607
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTAEST: gi|149111910|gb|EE191066.2|EE191066
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTAEST: gi|89759711|gb|DY688443.1|DY688443
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTAEST: gi|211048676|gb|FL294337.1|FL294337
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: AAACTTGTGAAGTTTTGAAAGACTGATTCGTGNCGTTGCATCCAGACTAT AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTAATAACCACGATGACCTGEST: gi|148964964|gb|EE015811.2|EE015811
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTG
EST: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTAEST: gi|76017216|gb|DT944386.1|DT944386
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTAEST: gi|50331437|gb|CO526563.1|CO526563
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTAEST: gi|71771570|gb|DR969507.1|DR969507
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
EST: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTA
acacttttgagaatgtaatttgaataaggatttgttgcaatgttttttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTATGTATCTTTTGCAGATAAATTTGGTGTTGTTTGGTTAGTCACTTTGCGG
ttttttatt CT-rich tract
aatgtaatttgaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagccacagtatattcttggactctgttccattgcaataattatatttcacagttgatgttatttaagcgaaaagacatattcattacatagttctgtccgtgaatttcacacttttgagaatgtaatttgaataaggatttgttgcaatgttttttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTGTATGTATCTTTTGCAGATAAATTTGGTGTTGTTTGGTTAGTCACTTTGCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT