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gtaagccacagtatattcttggactctgttccattgcaataattatatttcacagttgatgttatttaagcgaaaagacatattcattacatagttctgtccgtgaatttcacacttttgagaatgtaatttgaataaggatttgttgcaatgttttttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCT
species | Zea mays |
transcript | GRMZM2G131998_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTEST: gi|211051626|gb|FL294345.1|FL294345
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCT
EST: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTEST: gi|211051623|gb|FL294342.1|FL294342
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCT
EST: AAACTTGTGAAGGGTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT AACTTCGGAGAAAGAGG-TCAGTGCAGTTGTTTAT-AGCCACGATGEST: gi|211048680|gb|FL294341.1|FL294341
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAA-GAGGGTCAGTGCAGTTGTT-ATTAGCAACGATG
EST: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTEST: gi|211048669|gb|FL294330.1|FL294330
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCT
EST: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT AACTTCGGAGAAGAGEST: gi|211048668|gb|FL294329.1|FL294329
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAG
EST: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT AACTTCGGAGAARAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTEST: gi|211048676|gb|FL294337.1|FL294337
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCT
EST: AAACTTGTGAAGTTTTGAAAGACTGATTCGTGNCGTTGCATCCAGACTAT AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTAATAACCACGATGACCTEST: gi|211048673|gb|FL294334.1|FL294334
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCT
EST: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTAEST: gi|211051633|gb|FL294352.1|FL294352
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTA
EST: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT AACTTCGGAGAAGACGGTCAGTGCAGTTGTTATTAGCAACGATGACCTEST: gi|211051625|gb|FL294344.1|FL294344
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCT
EST: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCTEST: gi|211048667|gb|FL294328.1|FL294328
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCT
EST: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTAT AACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGAC
genomic: AAACTTGTGAAGGTTTGGAAGACTGATTCGTGGCGTTGCATCCAGACTATgtaagccaca ... tttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGAC
acacttttgagaatgtaatttgaataaggatttgttgcaatgttttttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCT
ttttttatt CT-rich tract
aatgtaatttgaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagccacagtatattcttggactctgttccattgcaataattatatttcacagttgatgttatttaagcgaaaagacatattcattacatagttctgtccgtgaatttcacacttttgagaatgtaatttgaataaggatttgttgcaatgttttttattgcagAACTTCGGAGAAGAGGGTCAGTGCAGTTGTTATTAGCAACGATGACCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG