1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gttatttcaatctcattgattcattgattgatgagcacataccatttctgcttttggtaatcatgccttgtgttctctggctacagGAAGGTGAGGGTGTTACACTTGATGGGACTGGAACAGAGACAGGGCAGATAATTGTGACAACAATAGGAGGTCACAATGGGAAGCCAAAGCAG
species | Zea mays |
transcript | GRMZM2G131853_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGAATATTATGACAATTAGCGACGATAAAGCTGATGGCCATAATGATAAG GAAGGTGAGGGTGTTACACTTGATGGGACTGGAACAGAGACAGGGCAGATAEST: gi|71315815|gb|DR794564.1|DR794564
genomic: TGAATATTATGACAATTAGCGACGATAAAGCTGATGGCCATAATGATAAGgttatttcaa ... ctggctacagGAAGGTGAGGGTGTTACACTTGATGGGACTGGAACAGAGACAGGGCAGATA
EST: TGAATATTATGACAATTAGCGACGATAAAGCTGATGGCCATAATGATAAG GAAGGTGAGGGTGTTACACTTGATGGGACTGGAACAGAGACAGGGCAGATAEST: gi|71432376|gb|DR813426.1|DR813426
genomic: TGAATATTATGACAATTAGCGACGATAAAGCTGATGGCCATAATGATAAGgttatttcaa ... ctggctacagGAAGGTGAGGGTGTTACACTTGATGGGACTGGAACAGAGACAGGGCAGATA
EST: TGAATATTATGACAATTAGCGACGATAAAGCTGATGGCCATAATGATAAG GAAGGTGAGGGTGTTACACTTGATGGGACTGGAACAGAGACAGGGCAGATAEST: gi|71315816|gb|DR794565.1|DR794565
genomic: TGAATATTATGACAATTAGCGACGATAAAGCTGATGGCCATAATGATAAGgttatttcaa ... ctggctacagGAAGGTGAGGGTGTTACACTTGATGGGACTGGAACAGAGACAGGGCAGATA
EST: TGAATATTATGACAATTAGCGACGATAAAGCTGATGGCCATAATGATAAG GAAGGTGAGGGTGTTACACTTGATGGGACTGGAACAGAGACAGGGCAGATAEST: gi|93015312|gb|EB640832.1|EB640832
genomic: TGAATATTATGACAATTAGCGACGATAAAGCTGATGGCCATAATGATAAGgttatttcaa ... ctggctacagGAAGGTGAGGGTGTTACACTTGATGGGACTGGAACAGAGACAGGGCAGATA
EST: TGAATATTATGACAATTAGCGACGATAAAGCTGATGGCCATAATGATAAG GAAGGTGAGGGTGTTACACTTGATGGGACTGGAACAGAGACAGGGCAGATA
genomic: TGAATATTATGACAATTAGCGACGATAAAGCTGATGGCCATAATGATAAGgttatttcaa ... ctggctacagGAAGGTGAGGGTGTTACACTTGATGGGACTGGAACAGAGACAGGGCAGATA
tgagcacataccatttctgcttttggtaatcatgccttgtgttctctggctacagGAAGGTGAGGGTGTTACACTTGATGGGACTGGAACAGAGACAGGGCAGATAATTGTGACAACAATAGGAGGTCACAATGGGAAGCCAAAGCAG
tgttctct CT-rich tract
taatcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttatttcaatctcattgattcattgattgatgagcacataccatttctgcttttggtaatcatgccttgtgttctctggctacagGAAGGTGAGGGTGTTACACTTGATGGGACTGGAACAGAGACAGGGCAGATAATTGTGACAACAATAGGAGGTCACAATGGGAAGCCAAAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT