1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtcagtatgcatctctttcttctattattagctaaatcaatttagctgacaacaaaaacttaaccatgcagTCAAGTTACACCATGACAAAAGTAGTAGCTTTGAAGCACCAAACCTGAAGGAGCATGAATCAGTCTTTGCAACACATGAAATGACGGTAGAAGCAACAAG
species | Zea mays |
transcript | GRMZM2G131756_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GATAACTTACACCACTCTGAACACTCCAAAAATAAGCACAGAACTTCCAG TCAAGTTACACCATGACAAAAGTAGTAGCTTTGAAGCACCAAACCTGAAGGEST: gi|32932273|gb|CF037085.1|CF037085
genomic: GATAACTTACACCACTCTGAACACTCCAAAAATAAGCACAGAACTTCCAGgtcagtatgc ... aaccatgcagTCAAGTTACACCATGACAAAAGTAGTAGCTTTGAAGCACCAAACCTGAAGG
EST: GATAACTTACACCACTCTGAACACTCCAAAAATAAGCACAGAACTTCCAG TCAAGTTACACCATGACAAAAGTAGTAGCTTTGAAGCACCAAACCTGAAGGEST: gi|32930947|gb|CF035759.1|CF035759
genomic: GATAACTTACACCACTCTGAACACTCCAAAAATAAGCACAGAACTTCCAGgtcagtatgc ... aaccatgcagTCAAGTTACACCATGACAAAAGTAGTAGCTTTGAAGCACCAAACCTGAAGG
EST: GATAACTTACACCACTCTGAACACTCCAAAAATAAGCACAGAACTTCCAG TCAAGTTACACCATGACAAAAGTAGTAGCTTTGAAGCACCAAACCTGAAGGEST: gi|32932133|gb|CF036945.1|CF036945
genomic: GATAACTTACACCACTCTGAACACTCCAAAAATAAGCACAGAACTTCCAGgtcagtatgc ... aaccatgcagTCAAGTTACACCATGACAAAAGTAGTAGCTTTGAAGCACCAAACCTGAAGG
EST: GATAACTTACACCACTCTGAACACTCCAAAAATAAGCACAGAACTTCCAG TCAAGTTACACCATGACAAAAGTAGTAGCTTTGAAGCACCAAACCTGAAGGEST: gi|32930605|gb|CF035417.1|CF035417
genomic: GATAACTTACACCACTCTGAACACTCCAAAAATAAGCACAGAACTTCCAGgtcagtatgc ... aaccatgcagTCAAGTTACACCATGACAAAAGTAGTAGCTTTGAAGCACCAAACCTGAAGG
EST: GATAACTTACACCACTCTGAACACTCCAAAAATAAGCACAGAACTTCCAG TCAAGTTACACCATGACAAAAGTAGTAGCTTTGAAGCACCAAACCTGAAGGEST: gi|32930157|gb|CF034969.1|CF034969
genomic: GATAACTTACACCACTCTGAACACTCCAAAAATAAGCACAGAACTTCCAGgtcagtatgc ... aaccatgcagTCAAGTTACACCATGACAAAAGTAGTAGCTTTGAAGCACCAAACCTGAAGG
EST: GATAACTTACACCACTCTGAACACTCCAAAAATAAGCACAGAACTTCCAG TCAAGTTACACCATGACAAAAGTAGTAGCTTTGAAGCACCAAACCTGAAGG
genomic: GATAACTTACACCACTCTGAACACTCCAAAAATAAGCACAGAACTTCCAGgtcagtatgc ... aaccatgcagTCAAGTTACACCATGACAAAAGTAGTAGCTTTGAAGCACCAAACCTGAAGG
ttcttctattattagctaaatcaatttagctgacaacaaaaacttaaccatgcagTCAAGTTACACCATGACAAAAGTAGTAGCTTTGAAGCACCAAACCTGAAGGAGCATGAATCAGTCTTTGCAACACATGAAATGACGGTAGAAGCAACAAG
acttaac putative branch site (score: 3)
tattattagctaaatc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtatgcatctctttcttctattattagctaaatcaatttagctgacaacaaaaacttaaccatgcagTCAAGTTACACCATGACAAAAGTAGTAGCTTTGAAGCACCAAACCTGAAGGAGCATGAATCAGTCTTTGCAACACATGAAATGACGGTAGAAGCAACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA