1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...cttcagagttcctgcatcatgatttggttgctttcctaaggcatgtgaaatttaattttatttttataattgatgagtttattacaactttaaaatgtagACGAATGGTTCGGCCGTCAGGGATGACCTTTGGGGTTCAAAGCTTGCTAGCAAATTTTATGGGTGCAGCAACTCAAGCAGCAGGTTTCTTG
species | Zea mays |
transcript | GRMZM2G131699_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCGCCGGTAGCATGGAGGAGTTCGAGCGCCGCGAGATTTCCCGTGCTCCG ACGAATGGTTCGGCCGTCAGGGATGACCTTTGGGGTTCAAAGCTTGCTAGCEST: gi|89249642|gb|DY621428.1|DY621428
genomic: GCGCCGGTAGCATGGAGGAGTTCGAGCGCCGCGAGATTTCCCGTGCTCCGgtaagtatgc ... taaaatgtagACGAATGGTTCGGCCGTCAGGGATGACCTTTGGGGTTCAAAGCTTGCTAGC
EST: GCGCCGGTAGCATGGAGGAGTTCGAGCGCCGCGAGATTTCCCGTGCTCCG ACGAATGGTTCGGCCGTCAGGGATGACCTTTGGGGTTCAAAGCTTGCTAGCEST: gi|149110252|gb|EE190310.2|EE190310
genomic: GCGCCGGTAGCATGGAGGAGTTCGAGCGCCGCGAGATTTCCCGTGCTCCGgtaagtatgc ... taaaatgtagACGAATGGTTCGGCCGTCAGGGATGACCTTTGGGGTTCAAAGCTTGCTAGC
EST: GCGCCGGTAGCATGGAGGAGTTCGAGCGCCGCGAGATTTCCCGTGCTCCG ACGAATGGTTCGGCCGTCAGGGATGACCTTTGGGGTTCAAAGCTTGCTAGCEST: gi|31909461|gb|CD650930.1|CD650930
genomic: GCGCCGGTAGCATGGAGGAGTTCGAGCGCCGCGAGATTTCCCGTGCTCCGgtaagtatgc ... taaaatgtagACGAATGGTTCGGCCGTCAGGGATGACCTTTGGGGTTCAAAGCTTGCTAGC
EST: GCGCCGGTAGCATGGAGGAGTTCGAGCGCCGCGAGATTTCCCGTGCTCCG ACGAATGGTTCGGCCGTCAGGGATGACCTTTGGGGTTCAAAGCTTGCTAGCEST: gi|78111344|gb|DV529741.1|DV529741
genomic: GCGCCGGTAGCATGGAGGAGTTCGAGCGCCGCGAGATTTCCCGTGCTCCGgtaagtatgc ... taaaatgtagACGAATGGTTCGGCCGTCAGGGATGACCTTTGGGGTTCAAAGCTTGCTAGC
EST: GCGCCGGTAGCATGGAGGAGTTCGAGCGCCGCGAGATTTCCCGTGCTCCG ACGAATGGTTCGGCCGTCAGGGATGACCTTTGGGGTTCAAAGCTTGCTAGCEST: gi|71322750|gb|DR798057.1|DR798057
genomic: GCGCCGGTAGCATGGAGGAGTTCGAGCGCCGCGAGATTTCCCGTGCTCCGgtaagtatgc ... taaaatgtagACGAATGGTTCGGCCGTCAGGGATGACCTTTGGGGTTCAAAGCTTGCTAGC
EST: GCGCCGGTAGCATGGAGGAGTTCGAGCGCCGCGAGATTTCCCGTGCTCCG ACGAATGGTTCGGCCGTCAGGGATGACCTTTGGGGTTCAAAGCTTGCTAGCEST: gi|211056621|gb|FL260439.1|FL260439
genomic: GCGCCGGTAGCATGGAGGAGTTCGAGCGCCGCGAGATTTCCCGTGCTCCGgtaagtatgc ... taaaatgtagACGAATGGTTCGGCCGTCAGGGATGACCTTTGGGGTTCAAAGCTTGCTAGC
EST: GCGCCGGTAGCATGGAGGAGTTCGAGCGCCGCGAGATTTCCCGTGCTCCG ACGAATGGTTCGGCCGTCAGGGATGACCTTTGGGGTTCAAAGCTTGCTAGCEST: gi|71308473|gb|DR790475.1|DR790475
genomic: GCGCCGGTAGCATGGAGGAGTTCGAGCGCCGCGAGATTTCCCGTGCTCCGgtaagtatgc ... taaaatgtagACGAATGGTTCGGCCGTCAGGGATGACCTTTGGGGTTCAAAGCTTGCTAGC
EST: GCGCCGGTAGCATGGAGGAGTTCGAGCGCCGCGAGATTTCCCGTGCTCCG ACGAATGGTTCGGCCGTCAGGGATGACCTTTGGGGTTCAAAGCTTGCTAGC
genomic: GCGCCGGTAGCATGGAGGAGTTCGAGCGCCGCGAGATTTCCCGTGCTCCGgtaagtatgc ... taaaatgtagACGAATGGTTCGGCCGTCAGGGATGACCTTTGGGGTTCAAAGCTTGCTAGC
tgaaatttaattttatttttataattgatgagtttattacaactttaaaatgtagACGAATGGTTCGGCCGTCAGGGATGACCTTTGGGGTTCAAAGCTTGCTAGCAAATTTTATGGGTGCAGCAACTCAAGCAGCAGGTTTCTTG
aattgat putative branch site (score: 55)
tttaattttattttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttcagagttcctgcatcatgatttggttgctttcctaaggcatgtgaaatttaattttatttttataattgatgagtttattacaactttaaaatgtagACGAATGGTTCGGCCGTCAGGGATGACCTTTGGGGTTCAAAGCTTGCTAGCAAATTTTATGGGTGCAGCAACTCAAGCAGCAGGTTTCTTG
- - - - - -ctgcatc
- - - - - - - - - - - - tggttgc
- - - - - - - - - - - - - - - - - - - aggcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attgatg