1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gttatgtttctgaaattgtgatatagagtttcttcatttgtactagctttgtaagtgctttgctgttctctctagtttcctagttctgtcttctgaccaacaatattaccttgcagCTTCGAAATCTTACATTGTCGGTGGGCCATGCTTGCTGCCCTCGGTGTTGTTGTTCCTGAGCTATTAGATCTATTTGGGTTAGTGCATTTTGTGGAGCCT
species | Zea mays |
transcript | GRMZM2G131489_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTTATGACCAACAATGATTACTGCTTTTGACAGCTTCATAAAATCA CTTCGAAATCTTACATTGTCGGTGGGCCATGCTTGCTGCCCTCGGTGTTGTEST: gi|78091368|gb|DV519742.1|DV519742
genomic: GTTATGACCAACAATGATTACTGCTTTTGACAGCTTCATAAAATCAgttatgtttc ... taccttgcagCTTCGAAATCTTACATTGTCGGTGGGCCATGCTTGCTGCCCTCGGTGTTGT
EST: GTTATGACCAACAATGATTACTGCTTTTGACAGCTTCATAAAATCA CTTCGAAATCTTACATTGTCGGTGGGCCATGCTTGCTGCCCTCGGTGTTGT
genomic: GTTATGACCAACAATGATTACTGCTTTTGACAGCTTCATAAAATCAgttatgtttc ... taccttgcagCTTCGAAATCTTACATTGTCGGTGGGCCATGCTTGCTGCCCTCGGTGTTGT
gctgttctctctagtttcctagttctgtcttctgaccaacaatattaccttgcagCTTCGAAATCTTACATTGTCGGTGGGCCATGCTTGCTGCCCTCGGTGTTGTTGTTCCTGAGCTATTAGATCTATTTGGGTTAGTGCATTTTGTGGAGCCT
ttctgac putative branch site (score: 2)
ttacctt putative PPT
aacaatatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttatgtttctgaaattgtgatatagagtttcttcatttgtactagctttgtaagtgctttgctgttctctctagtttcctagttctgtcttctgaccaacaatattaccttgcagCTTCGAAATCTTACATTGTCGGTGGGCCATGCTTGCTGCCCTCGGTGTTGTTGTTCCTGAGCTATTAGATCTATTTGGGTTAGTGCATTTTGTGGAGCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG